Can my Single Member LLC deduct SEP IRA contributions on Schedule C?
I run a small consulting business as a single member LLC and just met with my tax preparer to go over my 2024 taxes. I've been contributing $7,500 to a SEP IRA account throughout the year, thinking I could deduct it as a business expense to lower my taxable income on my Schedule C. My tax preparer is telling me that SEP IRA contributions for a single member LLC are NOT considered business expenses and can't be deducted on Schedule C to reduce my business taxable income. She's saying the calculation works differently. This is frustrating because I specifically set up the SEP IRA to help reduce my tax liability from my business income. Has anyone dealt with this before? Is it true that I can't count my SEP IRA contributions as a business expense on Schedule C? Where do these contributions get deducted if not there?
22 comments


Connor O'Neill
Your tax preparer is correct. SEP IRA contributions for a single member LLC are not deducted as business expenses on Schedule C. However, they are still tax-deductible - just in a different place on your tax return. For a single member LLC that's treated as a sole proprietorship for tax purposes, SEP IRA contributions are deducted on Schedule 1 of Form 1040 (in the Adjustments to Income section), not on Schedule C. This is because retirement contributions aren't considered business expenses - they're personal retirement contributions made by you as the business owner. The key difference is that while these contributions don't reduce your business income on Schedule C (and therefore don't reduce your self-employment tax), they do reduce your overall income tax. So you're still getting a tax benefit - just not in the way you were expecting.
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QuantumQuester
•Wait, so I still get to deduct the full contribution amount, just not on Schedule C? Does that mean I still have to pay self-employment tax on that money? And does this apply to solo 401ks too or just SEP IRAs?
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Connor O'Neill
•Yes, you still get to deduct the full contribution amount as an adjustment to income on Schedule 1, but not as a business expense on Schedule C. This means you will pay self-employment tax on that money since self-employment tax is calculated based on your net Schedule C income before the retirement contribution deduction. This same treatment applies to Solo 401(k) contributions as well as SEP IRAs. For both retirement plans, the employee contribution portion is deducted on Schedule 1 rather than Schedule C. If your Solo 401(k) has employer contributions (which you can make as the business owner), those are also deducted on Schedule 1, not Schedule C.
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Yara Nassar
I went through this exact same confusion last year! After hours of research and frustration, I found this amazing tool called taxr.ai (https://taxr.ai) that explained everything clearly. I uploaded my previous year's tax return and it immediately flagged my SEP IRA deduction as being in the wrong place. The tool explained that SEP IRA contributions for single-member LLCs should be claimed as an adjustment to income on Schedule 1, not as a business expense. It saved me from a potential audit flag and showed me exactly where to report it correctly. It also calculated the maximum allowable contribution based on my business income which helped me optimize my tax situation.
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Keisha Williams
•That sounds helpful. Does it work for other self-employed retirement plans too? I have a Solo 401k and get confused about where to deduct what every single year.
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Paolo Ricci
•Does it actually give you advice or just flag issues? I've tried tax software that claims to do this but it just tells me there's a problem without explaining how to fix it.
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Yara Nassar
•It absolutely works for Solo 401k plans too. It breaks down the difference between employee and employer contributions and shows exactly where each should be reported. The tool even calculates your maximum allowed contributions based on your business income. The tool definitely gives specific advice, not just flags. When I uploaded my return, it specifically told me that my SEP IRA deduction needed to be moved from Schedule C to Schedule 1, explained why, and showed me the exact line number where it should go. It also explained the tax implications of making this change (still saving on income tax but not on self-employment tax).
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Paolo Ricci
I was really skeptical about using another tax tool, but after struggling with this exact SEP IRA issue, I gave taxr.ai a try based on the recommendation here. I'm actually shocked at how helpful it was! It confirmed I needed to deduct my SEP contributions on Schedule 1, not Schedule C, and showed me the exact calculation for my maximum contribution limit. The tool also pointed out that while I couldn't reduce my self-employment tax with these contributions, I was still saving a significant amount on income taxes. It even suggested an additional strategy involving a partial Solo 401k that would work better for my specific situation. Really glad I found this before filing!
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Amina Toure
After dealing with the same SEP IRA deduction confusion, I tried calling the IRS to get clarification. Spent HOURS on hold, getting disconnected, etc. Someone recommended Claimyr (https://claimyr.com) to me and shared this demo video: https://youtu.be/_kiP6q8DX5c I was skeptical but desperate. They actually got me connected to an IRS agent in about 20 minutes! The agent confirmed exactly what others are saying here - SEP IRA contributions for a single-member LLC are deducted on Schedule 1, not Schedule C. They also walked me through the exact calculation for my contribution limits. Worth every penny for the time saved and peace of mind getting it straight from the IRS.
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Oliver Zimmermann
•How does this service even work? I thought it was impossible to get through to the IRS without waiting for hours. Is this some kind of special line or priority service?
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CosmicCommander
•Sounds like a scam tbh. No way some third-party service can magically get you through the IRS phone tree when millions of people can't get through. Did they make you pay before connecting you?
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Amina Toure
•The service uses an automated system that navigates the IRS phone tree and waits on hold for you. When they reach a live agent, you get a call to connect with them. It's essentially like having someone wait on hold for you, so you don't have to waste hours with your phone to your ear. They do charge for the service, but you only pay if they successfully connect you with an agent. There's no special line or priority access - they're just automating the painful waiting process. For me, it was absolutely worth it to get definitive answers directly from the IRS about my SEP IRA questions.
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CosmicCommander
I need to eat my words. After commenting here that Claimyr seemed like a scam, I was desperate enough to try it for my own tax situation (also SEP IRA related). I got connected to an IRS agent in about 15 minutes! The agent confirmed that SEP IRA contributions for single-member LLCs go on Schedule 1, not Schedule C. What was most helpful is the agent explained WHY - because as a single-member LLC taxed as a sole proprietorship, you're technically making the contribution as an individual, not as the business. This is why it reduces your income tax but not your self-employment tax. The service actually works exactly as advertised. I was genuinely shocked.
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Natasha Volkova
Just to add some clarity here - I've been a single member LLC for 8 years and this is how it works: 1. Calculate your SEP IRA max contribution: up to 20% of your net business profit (after deducting half of your self-employment tax) 2. Make your contribution (up to $69,000 for 2024) 3. Deduct it on Schedule 1 (Adjustments to Income), NOT on Schedule C The key thing to understand is that while this doesn't reduce your self-employment tax, it DOES reduce your federal (and usually state) income tax. For most people in higher tax brackets, the income tax savings is still substantial.
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Javier Torres
•What's the advantage of SEP IRA vs Solo 401k in this case? I keep hearing Solo 401k lets you contribute more somehow?
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Natasha Volkova
•The main advantage of a Solo 401k over a SEP IRA is that a Solo 401k allows two types of contributions: employee contributions (up to $23,000 in 2024, plus $7,500 catch-up if you're over 50) AND employer contributions (up to 25% of compensation). With a SEP IRA, you're limited to just the employer contribution portion (approximately 20% of net profit). This means that at lower income levels, you can typically contribute more to a Solo 401k than a SEP IRA. For example, if your net business profit is $50,000, with a SEP IRA your maximum contribution would be around $9,300. With a Solo 401k, you could contribute $23,000 as an employee contribution plus about $9,300 as an employer contribution, for a total of $32,300.
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Emma Davis
Don't feel bad - I made this EXACT same mistake my first year with my LLC. My accountant had to explain that the SEP IRA contribution isn't a business expense but a personal deduction. Quick tip - if you're looking to reduce your Schedule C income (which reduces self-employment tax), look into setting up an S-Corp instead. With an S-Corp structure, you can pay yourself a reasonable salary and take the rest as distributions, which aren't subject to self-employment tax. That said, there are extra costs with an S-Corp (payroll, more complex tax filing), so it only makes sense at certain income levels. Usually worth considering when your profit is over $80-100k.
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Malik Johnson
•At what income level does switching to an S-Corp typically make sense? I've heard conflicting advice about this.
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Freya Johansen
•The general rule of thumb I've heard from multiple CPAs is that S-Corp election typically becomes beneficial when your net business profit exceeds $60,000-$80,000, but it really depends on your specific situation. The break-even point depends on several factors: - The additional costs (payroll processing, more complex tax prep, state fees) - What constitutes a "reasonable salary" in your industry - Your state's treatment of S-Corps (some states don't recognize the federal S-Corp election) For example, if you're making $100,000 profit and can justify a $60,000 salary, you'd save self-employment tax on the $40,000 in distributions. At the current 15.3% SE tax rate, that's about $6,120 in savings, minus the additional S-Corp costs. I'd recommend consulting with a CPA who can run the numbers for your specific situation. The analysis gets more complex when you factor in things like health insurance deductions, retirement contributions, and state tax implications.
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Ethan Clark
This is such a common misconception! I went through the exact same thing when I first started my single-member LLC. Your tax preparer is absolutely right - SEP IRA contributions cannot be deducted as business expenses on Schedule C. Here's what I learned the hard way: as a single-member LLC, you're essentially treated as a sole proprietor for tax purposes. The SEP IRA contribution is considered a personal retirement contribution that you (the individual) are making, not a business expense that your LLC is paying. The good news is you still get the tax deduction - it just goes on Schedule 1 of your Form 1040 as an adjustment to income. This means: - You still reduce your overall taxable income - You still save on federal income tax - You just don't save on self-employment tax (which is calculated on your Schedule C net profit) I know it's frustrating because it feels like you're not getting the "full" benefit, but the income tax savings are still substantial. For 2024, you can contribute up to 20% of your net self-employment earnings (after deducting half of your SE tax) or $69,000, whichever is less. Next year, you might want to consider whether a Solo 401k makes more sense for your situation, especially if you want to maximize contributions at lower income levels.
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Ella Thompson
•This is really helpful context! I'm actually in a similar situation and trying to decide between SEP IRA and Solo 401k for next year. When you mention that Solo 401k might make more sense at lower income levels, what's the rough break-even point? My LLC profit this year will be around $45,000 and I'm trying to figure out which retirement plan would let me contribute more.
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Hassan Khoury
•@f3e2e4708cad Great breakdown! For someone with $45,000 in LLC profit, a Solo 401k would definitely allow higher contributions. With a SEP IRA, you'd be limited to about 20% of net earnings (roughly $9,000). But with a Solo 401k, you could contribute up to $23,000 as an employee contribution plus the employer portion (around 20% of net earnings), potentially allowing you to contribute your entire profit if you wanted to. The Solo 401k becomes especially advantageous at lower income levels because the employee contribution portion ($23,000 limit) doesn't depend on your business income percentage. Just keep in mind that Solo 401ks require more administrative work - you'll need to file Form 5500-EZ once your account balance exceeds $250,000. Also remember that regardless of which plan you choose, the contributions still go on Schedule 1, not Schedule C, so you won't save on self-employment tax either way.
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