Can my Single Member LLC deduct SEP IRA contributions on Schedule C?
I run a small consulting business as a single member LLC and just met with my tax preparer to go over my 2024 taxes. I've been contributing $7,500 to a SEP IRA account throughout the year, thinking I could deduct it as a business expense to lower my taxable income on my Schedule C. My tax preparer is telling me that SEP IRA contributions for a single member LLC are NOT considered business expenses and can't be deducted on Schedule C to reduce my business taxable income. She's saying the calculation works differently. This is frustrating because I specifically set up the SEP IRA to help reduce my tax liability from my business income. Has anyone dealt with this before? Is it true that I can't count my SEP IRA contributions as a business expense on Schedule C? Where do these contributions get deducted if not there?
19 comments


Connor O'Neill
Your tax preparer is correct. SEP IRA contributions for a single member LLC are not deducted as business expenses on Schedule C. However, they are still tax-deductible - just in a different place on your tax return. For a single member LLC that's treated as a sole proprietorship for tax purposes, SEP IRA contributions are deducted on Schedule 1 of Form 1040 (in the Adjustments to Income section), not on Schedule C. This is because retirement contributions aren't considered business expenses - they're personal retirement contributions made by you as the business owner. The key difference is that while these contributions don't reduce your business income on Schedule C (and therefore don't reduce your self-employment tax), they do reduce your overall income tax. So you're still getting a tax benefit - just not in the way you were expecting.
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QuantumQuester
•Wait, so I still get to deduct the full contribution amount, just not on Schedule C? Does that mean I still have to pay self-employment tax on that money? And does this apply to solo 401ks too or just SEP IRAs?
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Connor O'Neill
•Yes, you still get to deduct the full contribution amount as an adjustment to income on Schedule 1, but not as a business expense on Schedule C. This means you will pay self-employment tax on that money since self-employment tax is calculated based on your net Schedule C income before the retirement contribution deduction. This same treatment applies to Solo 401(k) contributions as well as SEP IRAs. For both retirement plans, the employee contribution portion is deducted on Schedule 1 rather than Schedule C. If your Solo 401(k) has employer contributions (which you can make as the business owner), those are also deducted on Schedule 1, not Schedule C.
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Yara Nassar
I went through this exact same confusion last year! After hours of research and frustration, I found this amazing tool called taxr.ai (https://taxr.ai) that explained everything clearly. I uploaded my previous year's tax return and it immediately flagged my SEP IRA deduction as being in the wrong place. The tool explained that SEP IRA contributions for single-member LLCs should be claimed as an adjustment to income on Schedule 1, not as a business expense. It saved me from a potential audit flag and showed me exactly where to report it correctly. It also calculated the maximum allowable contribution based on my business income which helped me optimize my tax situation.
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Keisha Williams
•That sounds helpful. Does it work for other self-employed retirement plans too? I have a Solo 401k and get confused about where to deduct what every single year.
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Paolo Ricci
•Does it actually give you advice or just flag issues? I've tried tax software that claims to do this but it just tells me there's a problem without explaining how to fix it.
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Yara Nassar
•It absolutely works for Solo 401k plans too. It breaks down the difference between employee and employer contributions and shows exactly where each should be reported. The tool even calculates your maximum allowed contributions based on your business income. The tool definitely gives specific advice, not just flags. When I uploaded my return, it specifically told me that my SEP IRA deduction needed to be moved from Schedule C to Schedule 1, explained why, and showed me the exact line number where it should go. It also explained the tax implications of making this change (still saving on income tax but not on self-employment tax).
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Paolo Ricci
I was really skeptical about using another tax tool, but after struggling with this exact SEP IRA issue, I gave taxr.ai a try based on the recommendation here. I'm actually shocked at how helpful it was! It confirmed I needed to deduct my SEP contributions on Schedule 1, not Schedule C, and showed me the exact calculation for my maximum contribution limit. The tool also pointed out that while I couldn't reduce my self-employment tax with these contributions, I was still saving a significant amount on income taxes. It even suggested an additional strategy involving a partial Solo 401k that would work better for my specific situation. Really glad I found this before filing!
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Amina Toure
After dealing with the same SEP IRA deduction confusion, I tried calling the IRS to get clarification. Spent HOURS on hold, getting disconnected, etc. Someone recommended Claimyr (https://claimyr.com) to me and shared this demo video: https://youtu.be/_kiP6q8DX5c I was skeptical but desperate. They actually got me connected to an IRS agent in about 20 minutes! The agent confirmed exactly what others are saying here - SEP IRA contributions for a single-member LLC are deducted on Schedule 1, not Schedule C. They also walked me through the exact calculation for my contribution limits. Worth every penny for the time saved and peace of mind getting it straight from the IRS.
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Oliver Zimmermann
•How does this service even work? I thought it was impossible to get through to the IRS without waiting for hours. Is this some kind of special line or priority service?
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CosmicCommander
•Sounds like a scam tbh. No way some third-party service can magically get you through the IRS phone tree when millions of people can't get through. Did they make you pay before connecting you?
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Amina Toure
•The service uses an automated system that navigates the IRS phone tree and waits on hold for you. When they reach a live agent, you get a call to connect with them. It's essentially like having someone wait on hold for you, so you don't have to waste hours with your phone to your ear. They do charge for the service, but you only pay if they successfully connect you with an agent. There's no special line or priority access - they're just automating the painful waiting process. For me, it was absolutely worth it to get definitive answers directly from the IRS about my SEP IRA questions.
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CosmicCommander
I need to eat my words. After commenting here that Claimyr seemed like a scam, I was desperate enough to try it for my own tax situation (also SEP IRA related). I got connected to an IRS agent in about 15 minutes! The agent confirmed that SEP IRA contributions for single-member LLCs go on Schedule 1, not Schedule C. What was most helpful is the agent explained WHY - because as a single-member LLC taxed as a sole proprietorship, you're technically making the contribution as an individual, not as the business. This is why it reduces your income tax but not your self-employment tax. The service actually works exactly as advertised. I was genuinely shocked.
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Natasha Volkova
Just to add some clarity here - I've been a single member LLC for 8 years and this is how it works: 1. Calculate your SEP IRA max contribution: up to 20% of your net business profit (after deducting half of your self-employment tax) 2. Make your contribution (up to $69,000 for 2024) 3. Deduct it on Schedule 1 (Adjustments to Income), NOT on Schedule C The key thing to understand is that while this doesn't reduce your self-employment tax, it DOES reduce your federal (and usually state) income tax. For most people in higher tax brackets, the income tax savings is still substantial.
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Javier Torres
•What's the advantage of SEP IRA vs Solo 401k in this case? I keep hearing Solo 401k lets you contribute more somehow?
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Natasha Volkova
•The main advantage of a Solo 401k over a SEP IRA is that a Solo 401k allows two types of contributions: employee contributions (up to $23,000 in 2024, plus $7,500 catch-up if you're over 50) AND employer contributions (up to 25% of compensation). With a SEP IRA, you're limited to just the employer contribution portion (approximately 20% of net profit). This means that at lower income levels, you can typically contribute more to a Solo 401k than a SEP IRA. For example, if your net business profit is $50,000, with a SEP IRA your maximum contribution would be around $9,300. With a Solo 401k, you could contribute $23,000 as an employee contribution plus about $9,300 as an employer contribution, for a total of $32,300.
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Emma Davis
Don't feel bad - I made this EXACT same mistake my first year with my LLC. My accountant had to explain that the SEP IRA contribution isn't a business expense but a personal deduction. Quick tip - if you're looking to reduce your Schedule C income (which reduces self-employment tax), look into setting up an S-Corp instead. With an S-Corp structure, you can pay yourself a reasonable salary and take the rest as distributions, which aren't subject to self-employment tax. That said, there are extra costs with an S-Corp (payroll, more complex tax filing), so it only makes sense at certain income levels. Usually worth considering when your profit is over $80-100k.
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Malik Johnson
•At what income level does switching to an S-Corp typically make sense? I've heard conflicting advice about this.
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Elijah O'Reilly
•The general rule of thumb I've seen from most tax professionals is that S-Corp election starts making sense when your net business profit is around $60,000-$80,000, but it really depends on your specific situation. Here's the basic math: Let's say you have $80,000 in profit. As a sole proprietorship (single-member LLC), you'd pay self-employment tax on the full $80,000 (about $11,304). With an S-Corp, you might pay yourself a $50,000 salary (subject to payroll taxes) and take $30,000 as distributions (not subject to self-employment tax). You'd save roughly $4,590 in self-employment taxes. However, you need to factor in the additional costs of S-Corp: payroll processing ($1,000-3,000/year), potentially higher accounting fees, and the complexity of reasonable salary requirements. If those costs are under your tax savings, it's worth considering. The key is that your salary must be "reasonable" for your industry - the IRS scrutinizes S-Corps that pay artificially low salaries to avoid payroll taxes.
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