SEP IRA deduction eligibility when spouse has 401k - filing jointly
So I just got married last year and this is our first time filing taxes together. I've always handled my own taxes in the past, but since we're now filing jointly and I run my own business as a sole proprietor, we decided to hire a CPA to make sure everything's done right. Here's where I'm confused - I've been contributing to my SEP IRA for years (about $12,500 annually), and I've always deducted these contributions on my taxes. But our new CPA is telling me that I'm not eligible to deduct my SEP IRA contributions anymore because my husband has a retirement plan through his employer (some kind of 401k). This doesn't sound right to me? I've been digging through the IRS website and haven't found anything that says my SEP IRA deductions are affected by my husband's retirement plan. Everything I've read suggests that as a self-employed person, I should still be able to take the SEP IRA deduction regardless of my spouse's situation. Has anyone dealt with this before? I'm wondering if our CPA might be mixing up SEP IRAs with traditional IRAs (which I know have different rules). Really appreciate any insight because this is a significant deduction for my business!
19 comments


Kiara Fisherman
You're right to question this! Your CPA is confusing SEP IRA rules with Traditional IRA rules. As a self-employed person, your eligibility for SEP IRA deductions is NOT affected by your spouse's employer retirement plan. The income limits and "active participant" restrictions apply to Traditional and Roth IRAs, not SEP IRAs. For SEP IRAs, you can generally contribute and deduct up to 25% of your net self-employment income (with annual limits - $66,000 for 2023), regardless of what retirement plans your spouse might have. Your SEP IRA contribution is a business expense reported on your Schedule C as a self-employed person. It's completely separate from the rules governing personal IRA contributions and deductions. I'd suggest having another conversation with your CPA and specifically ask them to explain their reasoning, citing the specific IRS regulations they're basing this on. If they can't provide clear documentation, you might want to get a second opinion from another tax professional.
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Jason Brewer
•Thank you so much for this clarification! I thought I was going crazy. Do you happen to know which specific IRS publication I can point to when I talk to my CPA about this? I'd like to have something concrete to reference.
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Kiara Fisherman
•You'll want to reference IRS Publication 560 "Retirement Plans for Small Business." It specifically covers SEP IRAs and the deduction rules. The key is that SEP IRA contributions are business deductions for self-employed individuals, not subject to the spousal retirement plan limitations that apply to traditional IRAs. Check out the section on "Deducting Contributions" in Publication 560. It explains that as a self-employed person, you deduct SEP contributions on your personal return, but these deductions work differently than traditional IRA deductions and are not subject to the same restrictions.
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Liam Cortez
I went through something similar last year and was getting nowhere with understanding my SEP IRA deduction eligibility after getting married. I randomly found this tool called taxr.ai (https://taxr.ai) that helped me figure it out. It analyzed my specific situation and explained exactly how the SEP IRA rules applied in my case. What's nice is you can upload any tax docs or IRS notices and it basically translates everything into plain English. It showed me why my CPA was wrong about my SEP IRA deductions and I ended up saving about $5k in taxes by making that contribution. It even helped me draft an email to my CPA with all the right references to IRS publications.
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Savannah Vin
•Did you have to talk to someone on the phone or was it all automated? My tax situation is complicated and I'm not sure if an AI tool would understand all the nuances of my business.
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Mason Stone
•How does this compare to just asking a question on Reddit or calling the IRS directly? Seems like another middleman that might just be repeating information you could get elsewhere.
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Liam Cortez
•You don't need to talk to anyone - it's all automated but surprisingly thorough. You just upload any documents and ask specific questions about your situation. I was skeptical too about the AI understanding complex tax scenarios, but it handled my multi-state self-employment income with rental properties without any issues. The main difference from Reddit or calling the IRS is you get immediate answers with citations to specific tax code sections. Unlike Reddit where advice varies wildly, and unlike the IRS where you might wait hours only to get transferred multiple times. The tool actually showed me exactly which line on which form I needed to focus on.
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Mason Stone
Just wanted to follow up - I tried that taxr.ai site after initially being skeptical. Uploaded my tax docs and asked specifically about SEP IRA deductions when my spouse has an employer plan. It confirmed everything the first commenter said but with specific sections of the tax code and examples that applied to my situation. It even explained the difference between the SEP IRA rules and Traditional IRA rules, which is exactly what was causing my confusion. Saved me from having to schedule another meeting with my CPA and gave me the confidence to push back on their incorrect advice. Definitely worth checking out if you're in a similar situation with conflicting tax advice.
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Makayla Shoemaker
If you're still having trouble convincing your CPA, you might want to try getting through to the IRS directly for an official answer. I know it sounds awful, but I used this service called Claimyr (https://claimyr.com) to get through to an IRS agent in about 15 minutes when I had a similar issue with retirement account questions. They have this system that basically waits on hold for you and calls you when an actual IRS agent picks up. You can see how it works here: https://youtu.be/_kiP6q8DX5c. I was incredibly skeptical at first (who isn't when dealing with IRS phone systems), but it actually worked and the agent confirmed my understanding of SEP IRA rules. Sometimes having that direct confirmation from the IRS itself can help clear things up, especially when professionals are giving conflicting advice.
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Christian Bierman
•Wait, how does this even work? The IRS phone system is notorious for disconnecting calls after hours of waiting. Does this actually bypass the queue somehow?
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Emma Olsen
•Sounds like a scam. Why would I pay someone to call the IRS for me when I can just do it myself? And how do they magically get through when millions of calls go unanswered every year?
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Makayla Shoemaker
•It doesn't bypass the queue - it just waits in line for you. Their system sits on hold so you don't have to, and when a human IRS agent picks up, it calls your phone and connects you directly to that agent. No magic, just technology handling the frustrating wait time. The value isn't in "calling for you" - it's in not having to waste hours of your day listening to hold music. I calculated it was worth it for me since I bill clients at $75/hour - spending 3-4 hours on hold would cost me more in lost work time than the service fee.
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Emma Olsen
I'll admit I was wrong about Claimyr. After my skeptical comment, I decided to try it since I needed clarification on my SEP IRA contribution limits with foreign earned income. Got through to an IRS agent in 22 minutes instead of the 3+ hours I spent last time I tried calling them directly. The agent confirmed exactly what others have said here - your spouse's employer retirement plan doesn't affect your eligibility for SEP IRA deductions as a self-employed person. Those restrictions only apply to traditional IRA deductibility. Worth the fee just to get an official answer directly from the IRS and not have to waste half my day on hold.
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Lucas Lindsey
Your CPA is definitely confusing the rules between different types of IRAs. I'm actually surprised they made this mistake since it's pretty basic retirement account knowledge. For Traditional IRAs, yes, there are income limits for deductibility if you or your spouse has a workplace retirement plan. But SEP IRAs are totally different - they're employer-sponsored plans where you're both the employer and employee due to your self-employment. Maybe double-check that your CPA has significant experience with self-employed clients? Not all CPAs specialize in small business/self-employment taxation and might miss these distinctions.
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Jason Brewer
•That's a good point. Our CPA was recommended by a friend who works in corporate finance, so maybe they don't deal with many self-employed clients. Would you recommend finding a CPA who specifically specializes in small business taxation?
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Lucas Lindsey
•Absolutely, I would recommend finding a CPA who specializes in small business or self-employment taxation. They'll be much more familiar with the nuances of things like SEP IRAs, Qualified Business Income deductions, home office deductions, and other self-employment specific issues. Ask potential CPAs what percentage of their clients are self-employed or small business owners. Someone who works predominantly with those types of clients will be much more valuable to you than someone who mainly handles W-2 employees or larger corporations.
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Sophie Duck
Just to add another data point - I'm self-employed AND my wife has a 401k at her job. We file jointly, and I've been deducting my SEP IRA contributions for the past 3 years with zero issues. My CPA never even questioned it because it's completely allowed. You might want to ask your CPA if they're thinking about the "spousal IRA" rules which are different. Or maybe they're thinking about the phase-out limits for Traditional IRA deductions when a spouse has a workplace plan. But those don't apply to SEP IRAs at all.
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Austin Leonard
•What tax software do you use? I'm in the same situation (self-employed with SEP IRA, spouse has 401k) and TurboTax kept giving me warnings about IRA deduction limits.
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Keith Davidson
I've been a tax preparer for over 15 years and can confirm what others have said - your CPA is absolutely wrong about this. SEP IRA contributions for self-employed individuals are not subject to the same restrictions as Traditional IRA contributions when a spouse has an employer retirement plan. The key distinction is that SEP IRA contributions are treated as employer contributions (since you're self-employed, you're both the employer and employee). These contributions are deducted "above the line" on Form 1040 and are not subject to AGI limits or spousal retirement plan restrictions. Traditional IRA contributions, on the other hand, can have deduction limits based on income and whether you or your spouse participates in an employer plan. Your CPA is mixing up these two completely different sets of rules. I'd strongly recommend getting a second opinion from a CPA who specializes in self-employment taxation. This is a significant error that could cost you thousands in unnecessary taxes.
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