Will I face penalties for taxes owed on my amended return?
I'm finishing an amendment for my 2019 tax return and I'll end up owing about $3,500 that I didn't originally pay. My original 2019 return was filed on time back in 2020 and I paid what I thought I owed then. I understand there are different penalties for original late returns: 1. Late filing penalty (5% per month) 2. Late payment penalty (0.5% per month) 3. Interest on unpaid taxes But I'm confused about how these penalties apply to amended returns. Since I filed and paid my original return on time, does the late filing penalty even apply here? I'm guessing the late payment penalty and interest would still apply since I technically underpaid, but I'm not sure from what date they would calculate these penalties. I want to send the correct payment amount with my amended return rather than dealing with another bill from the IRS a few months down the road. Any insights on how penalties work for amended returns when additional tax is owed?
36 comments


Omar Farouk
When you file an amended return that shows additional tax due, you're right to be concerned about penalties and interest. The good news is that the 5% per month late filing penalty doesn't apply to amended returns - that's only for original returns filed after the due date. However, the IRS will charge both the late payment penalty (generally 0.5% per month) and interest on the unpaid amount. These are calculated from the original due date of the return (so from April 2020 for your 2019 return) up until you pay the full amount. The interest rate changes quarterly - it's currently 7% annually but has fluctuated over the years. If you want to calculate a close estimate, you can use the IRS interest rates for each quarter since your original due date. The late payment penalty is capped at 25% of the unpaid tax. Keep in mind that interest is compounded daily and applies to both the unpaid tax and penalties.
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Chloe Martin
•Thank you for the detailed response. So to be clear, even though I'm voluntarily fixing my mistake now, they'll charge me penalties all the way back to the original due date? That seems rough. Does it matter that I had no idea I owed this money until recently? I found an old 1099 that never got reported.
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Omar Farouk
•Unfortunately, penalties and interest apply regardless of whether you knew about the unreported income. The IRS view is that taxpayers are responsible for reporting all income, and penalties apply from the original due date. The good news is that by voluntarily correcting the issue before the IRS discovers it, you avoid potential additional penalties for negligence or substantial understatement that might apply if they had found the error through an audit. The IRS sometimes offers penalty abatement for first-time mistakes under their First Time Penalty Abatement policy, but interest charges cannot typically be waived unless there was an IRS error.
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Diego Fernández
I was in a similar situation last year with an amended return for 2018. I used https://taxr.ai to help figure out exactly what I'd owe with all the penalties and interest. They analyzed my situation and gave me a breakdown of everything - saved me from guessing. Their calculator accounted for the changing interest rates over time which was super helpful since my amendment was for a tax year several years back.
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Anastasia Kuznetsov
•How accurate was their calculation compared to what the IRS eventually charged you? I'm always skeptical about these tax tools because they often give estimates that don't match what the IRS comes up with.
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Sean Fitzgerald
•Does this work for business taxes too? I have an S-corp and need to amend a return from 2020 with some missed deductions that will actually result in a refund. Wondering if this would help me estimate the interest I might receive.
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Diego Fernández
•The calculation was almost exact - maybe $20 difference because of how they compounded something. But it was close enough that I didn't get any surprise bills afterward. Yes, it works for business taxes too. They handle all kinds of tax situations including S-corps. You might actually get interest on your refund, though the IRS pays at a lower rate than they charge. The tool should help you estimate that as well.
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Anastasia Kuznetsov
I tried taxr.ai after seeing the recommendation here and it was incredibly helpful. I was amending a 2018 return and was totally confused about how much I'd end up owing with all the penalties. The tool broke everything down by quarter showing exactly how the interest compounds and when rates changed. I was able to send in the exact amount with my amended return and haven't heard anything back from the IRS - which in this case is good news! Definitely worth checking out if you're trying to calculate penalties and interest.
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Zara Khan
If you're planning to make a payment with your amended return but worried about getting it exactly right, I'd also recommend using https://claimyr.com to get in touch with the IRS directly. I spent weeks trying to call the IRS about my amended return penalties last year and kept hitting dead ends. Claimyr got me connected with an actual IRS agent in about 15 minutes who confirmed exactly what I would owe including all penalties and interest to date. You can see how it works here: https://youtu.be/_kiP6q8DX5c
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MoonlightSonata
•How does this actually work? Do they just call the IRS for you? Why would that be any faster than me calling myself?
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Mateo Gonzalez
•Sounds fishy. The IRS phone lines are notoriously backed up. I find it hard to believe any service could get through when millions of people can't. Plus, couldn't this be done by just using the IRS's online penalty calculator?
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Zara Khan
•They don't call for you - they hold your place in the IRS phone queue and call you when they reach an agent. It's faster because their system keeps dialing and navigating the phone tree until it gets through, rather than you having to redial constantly or wait on hold for hours. The IRS doesn't actually have an online penalty calculator that handles amended returns from previous years with changing interest rates. Their online tools are pretty basic and typically only work for the current tax year. When you're dealing with amendments from years ago, talking to an agent directly is often the only way to get an exact figure.
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Mateo Gonzalez
I was totally skeptical about Claimyr but got desperate after trying to call the IRS for 3 days straight about my amended return penalties. Decided to try it as a last resort and I'm shocked to say it actually worked! Got a call back in about 40 minutes (way faster than I expected) and spoke with an IRS rep who calculated my exact penalty amount including the interest to date. Saved me from sending in too little and getting hit with more interest later. I hate to admit I was wrong but this service really does work.
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Nia Williams
One thing to consider is requesting penalty abatement. If this is your first time having penalties, the IRS First Time Penalty Abatement policy might apply to you. You can't get the interest removed but the late payment penalties might be forgiven. You'd need to call the IRS and request it after you file the amendment and pay the tax though.
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PixelPrincess
•Thanks for mentioning this! Would I need to pay the full amount including penalties first and then request the abatement? Or should I just pay the tax plus interest and request they waive the penalties before I pay them?
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Nia Williams
•It's generally best to pay the full amount including penalties first, then request the abatement afterward. This stops additional interest from accruing while your request is being processed. If the IRS approves your penalty abatement request, they'll refund the penalty amount you paid. This approach is safer because if you only pay the tax and interest but your abatement request is denied, you'll end up with additional interest on the unpaid penalties during the processing time.
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Luca Ricci
Has anyone used those tax calculator spreadsheets to figure out what they owe for amended returns? I found one online but I'm not sure if it's accurate for older returns.
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Aisha Mohammed
•I tried using an Excel spreadsheet I found online and it was way off. The formula didn't account for the changing interest rates over the quarters. I ended up underpaying by like $300 and got a bill from the IRS later. My advice is to either use a specialized tool or just add an extra 10% to what you think you owe as a buffer.
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Amara Okonkwo
Based on everyone's experiences here, it sounds like calculating amended return penalties can be tricky with all the quarterly interest rate changes. I'm dealing with a 2019 amendment myself and found that the IRS compound daily interest calculation is more complex than I initially thought. One thing I discovered is that you can also request a penalty and interest calculation directly from the IRS by calling their automated system at 1-800-829-8815 and following the prompts for balance due inquiries. You'll need your SSN and the exact amount of additional tax owed, but it can give you a current balance including all penalties and interest without waiting for a representative. For what it's worth, I ended up paying about 15% more than my original tax due after 4 years of penalties and interest on an unreported 1099, so PixelPrincess might be looking at around $4,000-$4,500 total depending on exactly when in 2020 the original return was filed.
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Connor O'Neill
•That automated system tip is really helpful! I had no idea you could get a balance calculation that way. The 15% estimate on top of the original amount seems reasonable given what others have shared here. I'm planning to file my 2019 amendment next week and will definitely try calling that number first to get an exact figure before sending payment. Thanks for sharing your experience - it's reassuring to know I'm not the only one who missed a 1099 from a few years back!
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Mia Alvarez
I just went through this exact situation with a 2020 amended return last month. The IRS automated line at 1-800-829-8815 that Amara mentioned is incredibly useful - I wish I had known about it sooner! One additional tip: when you call that automated system, make sure you have your Social Security Number, the tax year, and the exact additional tax amount ready. The system will give you the total amount due including penalties and interest calculated to the current date. I ended up owing about $2,800 on an original $2,000 underpayment from 2020, so the roughly 40% increase over 4+ years tracks with what others are reporting here. The key thing I learned is that interest compounds daily, so even a few extra weeks of delay can add up. After paying the full calculated amount with my amended return, I also submitted a First Time Penalty Abatement request as Nia suggested. I'm still waiting to hear back on that, but it's worth trying if you have a clean penalty history with the IRS.
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Luca Romano
•Thanks for sharing your experience, Mia! That 40% increase is definitely eye-opening - I hadn't fully grasped how much the daily compounding interest adds up over several years. I'm curious about your First Time Penalty Abatement request - do you know roughly how long the IRS typically takes to respond to those? I'm wondering if I should file my amended return and pay the full amount first, then submit the abatement request, or if there's any benefit to submitting them around the same time.
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Natalia Stone
I went through a similar situation with my 2018 amended return and can share some insights. The IRS automated line at 1-800-829-8815 that others mentioned is definitely your best bet for getting an exact calculation. When I called, I had to have my SSN, tax year, and the additional tax amount ready. One thing I learned that might help: if you're unsure about the exact additional tax amount when calling the automated line, you can make multiple calls with slight variations to see how it affects the total. The system calculates everything in real-time, so you can get a sense of how much the penalties and interest are versus just the base tax. For reference, my 2018 amendment for about $4,000 in additional tax ended up costing me around $5,800 total when I finally paid in 2023. The daily compounding really adds up over time. I also successfully got the late payment penalties removed through First Time Penalty Abatement, which saved me about $600, though I still had to pay all the interest. My advice: call that automated line first, pay the full calculated amount with your amended return, then immediately request penalty abatement if you qualify. Don't wait - every day of delay costs you more in interest.
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Leo McDonald
•This is exactly the kind of detailed breakdown I was hoping to find! Your experience with the 2018 amendment is really helpful - going from $4,000 to $5,800 gives me a realistic expectation for what I might be facing. I'm particularly interested in your tip about making multiple calls to the automated line with slight variations. That's clever - I hadn't thought about using it to understand the breakdown between base tax, penalties, and interest. The fact that you saved $600 through First Time Penalty Abatement makes me feel more optimistic about trying that route too. Did you submit the penalty abatement request right after filing your amended return, or did you wait until the IRS processed it first?
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Caleb Stark
•I waited until about 2 weeks after I received confirmation that the IRS had processed my amended return before submitting the penalty abatement request. My thinking was that I wanted them to have the full picture of my account before requesting the abatement. The IRS typically takes 6-8 weeks to process penalty abatement requests, so there's no rush to submit it immediately with your amended return. What matters most is paying the full amount quickly to stop the interest clock. In my case, I submitted the request via phone call to their penalty abatement line, and they were able to approve it during that same call since I had a clean penalty history. Definitely worth the wait to get everything processed first!
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Nick Kravitz
The advice about using the IRS automated line at 1-800-829-8815 is spot on - I wish I had known about this when I was dealing with my own amended return situation last year. One additional resource that might help is IRS Publication 17, which has a section on amended returns and how penalties are calculated. It's not the easiest read, but it does explain the methodology they use. For what it's worth, I had a similar situation with a missed 1099 from 2019 and ended up owing about $2,100 on an original $1,500 underpayment. The key thing I learned is that the IRS calculates interest daily, not monthly, so even small delays in payment can add up. One strategy that worked for me was to call that automated line about a week before I was ready to mail my amended return, then call again the day before mailing to get the most current calculation. Interest accrues daily, so timing your payment as close as possible to when you call for the calculation helps minimize any discrepancy. Also, don't forget that if you do end up overpaying slightly, the IRS will send you a refund check for the difference - though it might take several months to receive it.
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Geoff Richards
•This is such valuable practical advice! I really appreciate the tip about calling the automated line twice - once a week before and once right before mailing. That daily interest compounding is no joke, so minimizing that gap makes total sense. I hadn't thought about the possibility of overpaying slightly and getting a refund later - honestly that might be worth it just for peace of mind, even if it takes a few months to get the money back. Better than risking another bill from the IRS down the road! I'm definitely going to check out IRS Publication 17 too. Thanks for sharing your experience - it's really helpful to hear from people who've actually been through this process successfully.
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TommyKapitz
I've been following this thread closely as I'm in a very similar situation with my 2019 return. Just wanted to add one more resource that helped me - the IRS has a penalty and interest calculator on their website at irs.gov, but it's pretty limited for amended returns from older years. What I found most helpful from all the advice here is the automated phone line approach. I called 1-800-829-8815 yesterday for my situation (owing about $2,800 in additional tax from 2019) and the total came out to around $3,900 with all penalties and interest calculated through today's date. That's roughly a 39% increase, which aligns with what others have shared for similar timeframes. One thing I noticed when I called - the system asks you to enter the additional tax amount, not your total balance due. Make sure you have just the extra tax you owe calculated from your amendment, not including any penalties or interest you might have estimated yourself. Thanks to everyone who shared their experiences here - it's made this whole process much less intimidating knowing that others have successfully navigated the same situation!
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Daniel Washington
•Thanks for sharing that real example, TommyKapitz! Your 39% increase from $2,800 to $3,900 is really helpful context and matches what others have reported. I appreciate the clarification about entering just the additional tax amount on the automated line - that's exactly the kind of detail that would trip me up if I wasn't prepared. It's reassuring to see so many people in this thread who have successfully handled similar situations. The automated phone line seems to be the consensus best approach for getting an accurate calculation. I'm feeling much more confident about tackling my own amendment now after reading everyone's experiences!
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Mia Roberts
This thread has been incredibly helpful! I'm dealing with a similar situation - found an unreported 1099-MISC from 2020 that I need to amend. Based on everyone's experiences here, it sounds like the IRS automated line at 1-800-829-8815 is definitely the way to go for getting an accurate calculation. One question I haven't seen addressed - does anyone know if there's a difference in how penalties are calculated if the unreported income was from freelance work versus investment income? I'm wondering if the self-employment tax I'll owe on top of the regular income tax affects the penalty calculation at all, or if penalties are only calculated on the income tax portion. Also, for those who successfully got First Time Penalty Abatement, did you submit the request in writing or handle it over the phone? I have a clean penalty history so I'm hoping to qualify, but I want to make sure I approach it the right way. Thanks again to everyone who shared their experiences - this community is amazing for navigating these complex tax situations!
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Dominic Green
•Great question about self-employment tax! From what I understand, penalties and interest are calculated on the total additional tax owed, which would include both the income tax and self-employment tax portions. The IRS doesn't distinguish between different types of taxes when calculating penalties - they just look at the total underpayment amount. When I dealt with my freelance 1099 amendment, the automated line at 1-800-829-8815 calculated penalties on the full amount including SE tax. Just make sure when you call that you enter your total additional tax liability (income tax + SE tax) as the amount owed. For First Time Penalty Abatement, I handled mine over the phone after my amended return was processed. Called the main IRS line, explained my situation, and they were able to approve it during that same call since I had no prior penalty history. Much faster than submitting paperwork and waiting! The key is having your account fully updated first, so wait until your amendment is processed before requesting abatement.
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Gabriel Ruiz
I just went through this exact situation with my 2019 amended return last month and wanted to share what I learned. The automated IRS line at 1-800-829-8815 that several people mentioned is absolutely the way to go - I got my exact penalty calculation in under 10 minutes. For context, I owed about $4,200 in additional tax from an unreported 1099-R (retirement distribution I forgot about), and the total with penalties and interest came to $5,850. That's about a 39% increase, which seems consistent with what others are reporting for 2019 amendments. One thing I discovered that might help - if you're not sure whether you qualify for First Time Penalty Abatement, you can ask about your penalty history when you call the main IRS line. They'll tell you right away if you have any prior penalties on your account. I found out I actually had a small penalty from 2017 that I'd forgotten about, so I didn't qualify for FTA. Better to know upfront than get your hopes up! The daily compounding interest is real - I delayed filing my amendment by two weeks while trying to calculate everything myself, and that delay probably cost me an extra $50-60. Just bite the bullet, call the automated line, pay the full calculated amount, and be done with it. The peace of mind is worth it!
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Kevin Bell
•Thanks for sharing your experience with the 2019 amendment, Gabriel! Your situation with the unreported 1099-R is really helpful context, and the 39% increase from $4,200 to $5,850 aligns perfectly with what everyone else has reported. I appreciate the tip about checking penalty history first - that's such a smart move to avoid disappointment later. Your point about the daily compounding interest costing you $50-60 for just a two-week delay really drives home how quickly those costs add up. I'm convinced now that the automated line approach is the way to go rather than trying to calculate everything myself. Did you end up paying the full amount with your amended return, or did you send a separate payment? I'm trying to figure out the best way to handle the logistics of getting everything submitted at once.
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Elin Robinson
I'm a tax preparer and can confirm everything that's been shared here is accurate. The automated line at 1-800-829-8815 is indeed the most reliable way to get exact penalty and interest calculations for amended returns. One additional tip I give my clients: when you call that automated line, write down not just the total amount but also ask the system to break down penalties vs. interest. This helps you understand exactly what you're paying for and can be useful if you later want to request penalty abatement. Also, regarding payment logistics - you can include a check with your amended return (Form 1040X) made out to "United States Treasury" with your SSN and tax year written in the memo line. Just make sure the payment amount matches what the automated system calculated as of the date you mail everything. If there's a small discrepancy due to a day or two of additional interest, the IRS will either bill you for the difference (usually under $10) or send a refund if you overpaid slightly. For those asking about First Time Penalty Abatement - definitely worth trying if you qualify, but remember it only applies to failure-to-pay penalties, not interest. The interest will still need to be paid regardless of your penalty history.
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Javier Torres
•This is incredibly helpful coming from a tax professional! I really appreciate the tip about asking the automated system to break down penalties vs. interest - that level of detail will definitely be useful if I decide to pursue penalty abatement later. Your advice about including a check with the amended return made out to "United States Treasury" with SSN and tax year in the memo is exactly what I needed to know about the payment logistics. It's reassuring to hear that small discrepancies of a day or two are normal and the IRS will handle them appropriately. The clarification that First Time Penalty Abatement only applies to failure-to-pay penalties and not interest is also really important - I had been hoping I might be able to get some of the interest waived too, but now I have realistic expectations. Thanks for taking the time to share your professional insights with this community!
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Aiden O'Connor
As someone who just went through this exact scenario with my 2020 amended return, I can't stress enough how helpful this thread has been! The automated IRS line at 1-800-829-8815 that everyone mentioned is absolutely the gold standard for getting accurate calculations. I had a similar situation with about $3,200 in additional tax owed, and like others have reported, I ended up paying around $4,400 total - roughly 37% more than the base amount. What really surprised me was how the daily compounding interest adds up so quickly, even just a few days of delay can cost you. One thing I learned that might help PixelPrincess and others: when you do call that automated line, try to call on the same day you plan to mail your return if possible. I called on a Friday, calculated everything, then didn't mail until the following Wednesday, and ended up slightly underpaying by about $15. The IRS sent me a small bill later, but it was manageable. Also, definitely pursue First Time Penalty Abatement if you qualify - I was able to get about $380 in penalties waived, though as Elin mentioned, the interest portion still had to be paid. The phone call to request it was surprisingly straightforward once my amended return was processed. The peace of mind of having this resolved is worth every penny. Don't overthink it - call the automated line, pay the full calculated amount, and move forward!
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