How to Fix Roth IRA Over-Contribution from 2019 - Penalty and Form 5329 Questions
I recently discovered I accidentally over-contributed to my Roth IRA back in 2019 and I'm trying to figure out how to fix it. In 2019, my eligible income from my W2 (box 1) was only $5,500, but I contributed $6,900 to my Roth IRA for that tax year in early 2020 when I opened the account. So it looks like I over-contributed by about $1,400. For 2020, I contributed the full $6,000 to my Roth (which I was eligible for). But then in 2021, I only put in around $3,800 even though I could have contributed the full $6k. I've been doing some research, and it seems like I need to pay a 6% penalty for each year the excess amount stayed in my account. So that would be 2019 and 2020, but not 2021 or later because I under-contributed in 2021 by more than my previous excess amount. I think the penalty applies just to the $1,400 excess, not any earnings on it. From what I understand, I need to file Form 5329 with Part IV completed for both 2019 and 2020. I'm confused about whether I can just send these forms on their own or if I need to submit amended tax returns for those years too. For context, I filed my 2019 return by mail but have been e-filing since 2020. I haven't gotten any notices from the IRS about this issue - I just noticed it myself recently. Should I still try to fix it even though it's been a few years? Is there a statute of limitations for this kind of situation? Just trying to do the right thing here and avoid bigger problems down the road.
19 comments


Maria Gonzalez
You've got a good understanding of the situation! You're correct that when you contribute more to a Roth IRA than your earned income allows, you'll owe a 6% excise tax on the excess contribution for each year it remains in your account. Form 5329 is indeed what you need to file. You'll need to complete Part IV for both 2019 and 2020 tax years. The 6% penalty applies only to the excess amount ($1,400 in your case), not the earnings on that amount. And yes, since you under-contributed in 2021 by more than the excess from 2019, you effectively "absorbed" that excess contribution, so no penalty would apply for 2021 and beyond. For filing the forms, you don't need to submit complete amended returns (1040-X) if the only change is the Form 5329 penalty. You can file these forms as standalone submissions. Just be sure to include payment for the penalties (6% of $1,400 for each year). There's technically no statute of limitations for filing Form 5329 when it hasn't been filed before, so you're right to address this now before it potentially becomes an issue during an audit or account review.
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Natalie Chen
•If they file Form 5329 now for those past years, will they also owe interest on the penalties since they're being paid late? And does the IRS typically catch these kinds of over-contributions or do they rely on taxpayers to self-report?
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Maria Gonzalez
•Yes, you'll likely owe some interest on the penalties since they're being paid after the original due dates. The interest rate varies by quarter, but it's generally a few percentage points above the federal short-term rate. The IRS has systems that compare information reported by financial institutions with taxpayer filings, but these kinds of Roth contribution issues aren't always caught right away. Many are identified during audits or account reviews years later. That's why it's smart to self-correct when you discover an issue - the penalties and interest will be less than if the IRS finds it later and potentially applies additional penalties for failure to report.
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Santiago Martinez
I had a similar situation with over-contributing to my Roth IRA back in 2021. After researching for hours and getting nowhere, I finally used https://taxr.ai to analyze my situation. Their AI tool examined my W-2s, contribution statements, and previous tax returns, then laid out exactly what forms I needed to file and calculated my penalty. The best part was that it explained how my under-contribution in the following year could offset the previous excess (just like in your case). It also generated a letter explaining my situation to include with my Form 5329 submissions. Saved me from having to pay a tax professional hundreds of dollars for what turned out to be a relatively straightforward fix.
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Samantha Johnson
•Did it actually help you fill out the Form 5329? That's the part I'm confused about - how to show that an under-contribution in a later year cancels out the excess contribution from an earlier year. The form isn't very clear on this.
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Nick Kravitz
•I'm skeptical about these AI tax tools. How can you be sure it gave you the right advice? Did the IRS accept your filing without any issues? I'd be nervous trusting something like this with potential penalties involved.
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Santiago Martinez
•It walked me through exactly how to fill out each line of Form 5329 for both years, with specific instructions for showing the absorption of prior year excess contributions. The key is properly completing line 15 on the form for the year where you under-contributed, showing that you're applying this toward the previous excess. Regarding accuracy, the tool cites all the relevant IRS publications and tax code sections that apply to each recommendation. The IRS accepted my submission without any issues or follow-up questions. The advice matched what I later confirmed with a CPA friend, but I got it immediately rather than waiting for an appointment. I was skeptical too at first, but the detailed explanations and references to specific IRS rules convinced me.
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Nick Kravitz
I was really skeptical about using a tax AI tool for my Roth IRA excess contribution problem, but I decided to try taxr.ai after seeing it mentioned here. I'm actually shocked at how well it worked for my situation. The system analyzed my contribution history and walked me through exactly how to document my excess contribution removal on Form 5329. It even helped me draft a clear explanation letter to the IRS that explained my situation. The most helpful part was how it explained the "absorption method" of fixing past excess contributions with current under-contributions. My forms were accepted without any issues, and I received confirmation that my Roth IRA is now in good standing. I assumed I'd need to pay a tax professional, but this saved me both money and stress.
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Hannah White
I spent 4 hours on hold with the IRS trying to get clarity on this exact issue last month. Finally gave up and used https://claimyr.com instead - you can watch how it works at https://youtu.be/_kiP6q8DX5c. They got me connected to an actual IRS agent in about 20 minutes instead of the endless hold music. The agent confirmed that for Roth over-contributions, you can file standalone Form 5329s without needing to amend your entire returns. She also explained that while there's no statute of limitations for unfiled 5329s, it's always better to self-correct than wait for the IRS to discover the issue during an audit or review of your account. The agent even emailed me some helpful publications about IRA contribution limits that clarified several questions I had.
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Michael Green
•How does this service actually work? Sounds too good to be true. The IRS phone system is notoriously impossible to navigate.
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Mateo Silva
•Sorry, but I don't believe for a second that anyone got through to the IRS in 20 minutes, especially during tax season. I've tried calling dozens of times over several months and never got through. This has to be some kind of scam.
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Hannah White
•The service works by using their dedicated line to the IRS and placing you in a callback queue. When your turn comes up, they connect you directly to the next available agent. I was skeptical too, but it actually works - you don't have to sit on hold yourself. Think of it as having someone else wait in line for you. It's definitely not a scam - they don't ask for any personal tax information and you're speaking directly with real IRS agents. The service just handles the waiting part. I was surprised too, but after wasting half a day on hold previously, it was worth trying. They can't guarantee exactly how quickly you'll get through since it depends on IRS staffing, but 20-30 minutes has been typical in my experience.
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Mateo Silva
I hate to admit it, but I was completely wrong about that Claimyr service. After leaving that skeptical comment, I was still desperate to talk to the IRS about my own Roth IRA contribution issues, so I decided to try it myself. To my absolute shock, I was connected to an IRS representative in about 25 minutes. The agent was extremely helpful and walked me through exactly how to handle my excess contribution situation. She confirmed I only needed to file Form 5329 for the affected years, and explained that I could absorb past excess contributions through under-contributing in future years - exactly what the original poster was asking about. I've spent countless hours over the past three months trying to get through to the IRS on my own with zero success. This literally saved me days of frustration. I'm still surprised it actually worked.
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Victoria Jones
One thing nobody has mentioned yet - if you have earnings on that excess contribution, you'll need to calculate and withdraw those proportional earnings too if you're going with the withdrawal method instead of the absorption method. The earnings would be taxable in the year you withdraw them. Since you're going with the absorption method (using your 2021 under-contribution to offset the earlier excess), you don't need to withdraw anything, but you still owe the 6% penalty for 2019 and 2020 as you correctly stated. Also, make sure you're using the correct version of Form 5329 for each tax year - the forms change slightly year to year.
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Elijah Brown
•Thanks for mentioning the earnings part! Do you know if I need to include any special explanation with my Form 5329 submissions to clarify that I'm using the 2021 under-contribution to absorb the excess from 2019? The form itself doesn't seem to have a clear place to document this connection between tax years.
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Victoria Jones
•You don't need to include a special explanation on the form itself. The absorption method works automatically through the tax code. For your 2019 and 2020 Forms 5329, you'll report the excess contribution and calculate the 6% penalty. Then on your 2021 Form 5329 (which you should also file if you haven't), you would show $0 excess contributions. The IRS will see that you had contribution room available in 2021 that you didn't use, and that effectively absorbs the prior excess. If you want to be extra careful, you can include a brief cover letter explaining your situation with the forms, but it's not required. The forms themselves, properly completed, should tell the story.
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Cameron Black
Don't forget that if your income was only $5,500 in 2019, you were only eligible to contribute that amount (or your earned income, whichever is less) to your Roth IRA, not the full limit which was $6,000 that year. A lot of people miss this detail - you can only contribute up to 100% of your earned income if it's less than the annual limit.
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Jessica Nguyen
•This is such an important point! I made this exact mistake when I was working part-time during college. Thought I could put in the full $6k regardless of income. The tax software I used didn't catch it either.
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Lucas Schmidt
Just wanted to add a few practical tips for filing your Form 5329s based on my experience with a similar situation: 1. Mail each Form 5329 separately with its own check for the penalty amount. Don't combine years into one envelope - it can cause processing delays. 2. Calculate interest on the penalties using the IRS underpayment rates for each quarter since the original due dates. You can find these rates on the IRS website. Include the interest payment with each form. 3. Keep detailed records of everything - copies of forms, payment receipts, certified mail receipts if you use them. The IRS processing times have been longer lately. 4. Consider getting a transcript of your account after filing to confirm everything was processed correctly. You can request these online through the IRS website. The good news is that by self-correcting, you're avoiding much harsher penalties that could apply if this were discovered during an audit. The 6% excise tax is really quite reasonable compared to other IRS penalties.
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