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Not at all! Those quarterly estimated tax payments will be credited toward their total tax liability on the joint return. When they file the amended return, they'll include those payments on the appropriate line. The IRS keeps track of all payments made under both SSNs tied to a joint return.
Just want to add - make sure you file the amendment ASAP. I made a similar mistake a few years back (forgot to include some freelance income) and waited too long to fix it. Ended up with penalties that could have been avoided if I'd acted faster. The IRS is generally more lenient if you correct mistakes voluntarily before they find them!
I had almost the identical situation with meme stocks in 2021. The key issue is "wash sales" that weren't properly reported. If you were trading the same stock multiple times within 30 days (which most of us meme stock folks were doing), the wash sale rule affects your cost basis. The brokerage SHOULD track this, but many of the discount brokers had systems that couldn't handle the volume of trades happening during that crazy period. You need to go through your trades chronologically and identify any wash sales, then adjust your cost basis accordingly. It's tedious work but you can absolutely get this fixed. The IRS is actually pretty reasonable when you can show proper documentation that proves your real gains/losses.
What software did you use to track your wash sales? I've been trying to use Excel but it's getting really complicated with hundreds of trades.
I ended up using a combination of TaxAct Premier (which has a decent stock transaction import feature) and a custom spreadsheet. The key is to sort all transactions by stock symbol and then by date, which makes it easier to identify the 30-day windows. If you have more than a hundred transactions though, I'd strongly consider using a specialized tool like the one mentioned above or hiring a tax pro who specializes in investment taxes. I spent nearly 40 hours reconstructing everything manually and still wasn't 100% confident in my calculations. It's worth paying for help with this many transactions - especially with an audit on the line.
Quick tip that helped me with a similar situation - if your IRS letter has a CP2000 number on it (check the top right corner), this isn't technically an "audit" but an automated underreporter notice. These are easier to resolve than a full audit. For CP2000 notices involving investment income, they're automatically generated when your 1099-B forms don't match what you reported. As others have said, you need to file a response with Form 8949 showing your correct cost basis. The good news is the response rate for these notices is actually pretty high if you provide proper documentation. I was in a similar situation with about $45k in "phantom gains" and got my case completely resolved within 3 months.
One thing nobody's mentioned yet - make sure you're tracking EVERYTHING. I use a spreadsheet with categories for all business expenses (software, equipment, home office, travel, etc). Also take photos of receipts with your phone immediately. Trust me, trying to sort through a shoebox of receipts at tax time is a nightmare I've lived through.
Do you use any specific apps for tracking expenses? I've been just using my phone's camera for receipts but it's getting disorganized fast.
I personally use QuickBooks Self-Employed which automatically categorizes most expenses when connected to your bank account/credit card. It also has a receipt scanner in the app that can match receipts to transactions. There are also free options like Wave that work well for basic tracking. The important thing is having a system - any system - rather than trying to remember everything at tax time. Just make sure you're consistent with it and do a quick review weekly so things don't pile up.
Don't forget about setting aside money for taxes! The general rule I follow is 25-30% of all freelance income goes straight into a separate savings account. Learned this the hard way my first year when I owed way more than expected. Self-employment tax (15.3%) plus regular income tax adds up fast.
I use 28% as my set-aside percentage and it's worked perfectly for the last three years. Also remember you'll need to make quarterly estimated payments if you expect to owe more than $1000 at tax time. The due dates are April 15, June 15, Sept 15, and Jan 15 of the following year.
Has anyone had issues with the 1098-T not showing all qualified expenses? My wife's university didn't include some required course fees on the form even though they're eligible for the credit.
Just be careful with applying for the ITIN at the same time as filing. We did this last year (similar H1-B/F1 situation) and our refund was delayed nearly 4 months while they processed the ITIN application. If possible, I'd recommend getting the ITIN before filing to avoid delays.
Yikes, 4 months is a long wait! Is there any way to expedite the ITIN process? We're already in February and I'm worried about getting everything done before the filing deadline.
Unfortunately, there's no official expedite process for ITINs. However, you can use a Certified Acceptance Agent (CAA) instead of mailing in original documents, which can speed things up. Some CAAs can verify your documents on the spot and submit certified copies with your application. Also, you can still file on time even if the ITIN isn't processed yet. Just submit your return with the W-7 by the deadline, and you won't face late filing penalties. Your refund will be held until the ITIN is issued, but at least you'll be in compliance with the filing deadline.
Naila Gordon
Have you looked into tax software that lets you prepare everything yourself but then just pay a smaller fee for only the e-filing portion? Some programs let you work through everything for free, then charge $15-20 just for the state and federal transmission rather than the full $50+ for the complete service. Might be a middle ground between completely free paper filing and the more expensive full-service options.
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Gael Robinson
β’I didn't know that was an option! Most of the ones I looked at wanted the full payment upfront before even starting. Do you have specific ones you'd recommend that let you pay just for the filing part? I've already filled out all my forms so I'm really just looking for the electronic submission part.
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Naila Gordon
β’FreeTaxUSA is pretty good for this approach. You can complete your federal return for free, then it's just $15 for the state portion. Some others like TaxAct and TaxSlayer have similar options where the federal basic filing is free and you just pay for state. If you've literally already completed the physical forms with a pen, then using the IRS Free File Fillable Forms mentioned above is your best bet. You'll just need to transfer the information from your paper forms to the electronic versions. There's a bit of duplicate work, but it's free and gives you the e-file benefits.
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Cynthia Love
Don't forget to make copies of everything before mailing!!! Learned this the hard way when the IRS claimed they never received my return two years ago and I had no proof. Such a nightmare. Also if ur expecting a refund, paper filing will slow it down by weeks or months compared to e-filing.
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Darren Brooks
β’Certified mail with return receipt is essential too. It's a few extra dollars at the post office but gives you proof of when they received it. I file on paper every year and always use certified mail after having a return "lost" in 2018.
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