Can I contribute to a SEP IRA if I have W2 income and 1099 income from separate employers?
I have a retirement planning question that's been bugging me. I work full-time for Company XYZ (W2 employee) and I've already maxed out my 401k contributions for the year ($22,500 for 2025). My husband runs his own S-Corporation, and I also do some work for his business. We're trying to figure out the best way to structure my compensation from his business to maximize our retirement savings. We have two options we're considering: Option 1: I receive a 1099 from my husband's S-Corp for about $35k at year-end. If we go this route, can I contribute all $35k to a SEP IRA, or is there some limit I need to be aware of since I already maxed out my 401k elsewhere? Option 2: I receive a W2 for $35k from the S-Corp in addition to my regular employer's W2. Since I've already hit my 401k max through my main job, I'm pretty sure I can't contribute more to another 401k. But could I still contribute to a SEP IRA in this scenario? If yes, what would be the limit? Which option would be better for maximizing retirement savings? Thanks in advance!
29 comments


Miles Hammonds
The key here is understanding how the IRS treats these different scenarios regarding retirement accounts. For Option 1 (1099 income): Yes, you can establish a SEP IRA for your self-employment income. However, you can't contribute "all $35k" - the limit for SEP IRA contributions is 25% of your net self-employment income (after deducting the self-employment tax). So if your net income is $35k, your maximum SEP contribution would be around $8,750. This is completely separate from your 401k maximum at your W2 job. For Option 2 (second W2): You're correct that you can't contribute more to another 401k since you've hit the $22,500 employee contribution limit (for 2025) at your main job. However, the S-Corp could still make employer contributions to a retirement plan for you. Unfortunately, you cannot establish a SEP IRA for W2 income - SEP IRAs are only for self-employment income. The better option depends on other factors like tax planning and business expenses, but Option 1 typically gives you more flexibility for making your own retirement contributions through the SEP IRA.
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Ruby Blake
•Wait I'm confused. If OP's husband has an S-Corp, isn't the 1099 income considered self-employment income? So could she still do the SEP IRA with the 1099 option? And if she goes with option 2, could the S-Corp do a SIMPLE IRA instead or something?
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Miles Hammonds
•Yes, the 1099 income is indeed considered self-employment income, which is why she can establish a SEP IRA under Option 1. The 1099 income is separate from her W2 job, allowing her to make SEP IRA contributions up to 25% of her net self-employment earnings. For Option 2, you're right that the S-Corp could potentially establish a SIMPLE IRA or even a Solo 401(k) where the S-Corp makes employer contributions. The S-Corp (as the employer) could contribute up to 25% of her W2 compensation from the S-Corp, up to the total annual limits. This would be completely separate from her personal 401(k) contribution limits at her other job.
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Micah Franklin
I was in a similar situation last year and found this super helpful tax tool at https://taxr.ai that analyzes your specific situation to maximize retirement contributions across multiple income sources. It showed me exactly how much I could contribute to my SEP IRA based on my 1099 income while accounting for my maxed-out 401(k) at my day job. The tool actually walks you through the specific calculations for SEP IRA contribution limits and shows you how the 25% limit is applied to your net earnings after self-employment tax deductions. It also analyzed whether I should take the 1099 or W2 route for my side gig by comparing total tax implications. Definitely saved me from making some big mistakes!
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Ella Harper
•This sounds interesting but did it actually save you money? Like did it find deductions you wouldn't have known about otherwise? I'm also juggling W2 and 1099 income and the retirement account rules are so confusing.
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PrinceJoe
•I'm skeptical about these tax tools. Wouldn't an accountant be a better choice for this kind of situation? There's a lot of nuance with S-Corps and SEP IRAs. How accurate was the advice compared to what a CPA would tell you?
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Micah Franklin
•It absolutely saved me money! The tool identified that I was calculating my SEP IRA contribution wrong - I was using gross income instead of net income after SE tax, which would have caused me to over-contribute and possibly face penalties. It found about $3,800 in additional deductions I could take for my business that I hadn't considered. Regarding using an accountant, I actually showed the results to my CPA afterward, and she was impressed with the accuracy. The difference is that I could run different scenarios instantly (W2 vs 1099, different income levels, etc.) without paying my CPA's hourly rate for each calculation. I still used my accountant for filing, but the tool helped me make informed decisions beforehand and come prepared with questions.
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Ella Harper
Just wanted to follow up and say I tried the taxr.ai tool that was mentioned above, and wow - it was exactly what I needed! I've been struggling with this exact W2/1099 retirement contribution confusion. The tool showed me that in my case, taking 1099 income from my side gig would allow me to contribute about $9,400 to a SEP IRA even though I've already maxed my 401k at my primary job. It even calculated the exact self-employment tax I'd owe and showed me how that factors into the contribution limit. The analysis made it super clear which option would leave me with more retirement savings after taxes. I was going to just take a W2 from my second job because it seemed simpler, but now I see I'd be leaving thousands in potential retirement savings on the table. Definitely worth checking out if you're in this situation!
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Brooklyn Knight
If you're trying to reach the IRS to confirm retirement contribution rules for multiple income sources, good luck! I spent 3+ hours on hold last month trying to get clarity on SEP IRA limits with W2 and 1099 income. Finally discovered https://claimyr.com and their video demo at https://youtu.be/_kiP6q8DX5c - they actually got me connected to an IRS agent in under 20 minutes! The agent confirmed that with Option 1 (1099 income), you can contribute to both your employer's 401k AND a SEP IRA for your self-employment income, but with different limits for each. For Option 2, the S-Corp could make employer contributions to a retirement plan for you even if you've maxed out your employee contributions elsewhere. Ended up saving me from making a major filing mistake.
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Owen Devar
•How does that even work? Is this legit? I thought the IRS phone system was completely broken. Are they just constantly calling until they get through?
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Daniel Rivera
•Yeah right. No way this works. I've literally never gotten through to a real person at the IRS no matter how many times I've tried or how long I've waited. Sounds like a scam to me.
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Brooklyn Knight
•It works by using a system that navigates the IRS phone tree and waits on hold for you. Once they reach a representative, you get a call to connect with the agent. It's not constantly calling - they just have technology that holds your place in line so you don't have to. Regarding whether it's legit - I was skeptical too! But it absolutely worked for me. They don't ask for any sensitive information - you just give them your phone number so they can call you when they reach an agent. The service handles the painful waiting process, and you only get charged if they actually connect you. I was planning to wait on hold myself for hours again, but this saved me a huge headache.
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Daniel Rivera
I need to eat my words and apologize for my skepticism about Claimyr. After posting my doubtful comment, I was still desperate to talk to the IRS about some complicated retirement account questions (similar to the original post about W2/1099/SEP IRA situations). I decided to try the service despite my doubts, and I'm completely shocked - it actually worked! I got connected to an IRS agent in about 15 minutes after trying unsuccessfully for WEEKS on my own. The agent walked me through exactly how the contribution limits work when you have both W2 and 1099 income and confirmed I could contribute to both my employer 401k and a SEP IRA based on my self-employment income. Seriously, I've never been so happy to be wrong about something. Would have saved me so much stress if I'd tried it sooner instead of spending hours listening to the IRS hold music.
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Sophie Footman
Another thing to consider is that with Option 1 (1099), you'll have to pay self-employment tax (15.3%) on that income. With Option 2 (W2), the S-Corp would pay half of the FICA taxes. So even though Option 1 gives you the SEP IRA opportunity, you might end up paying more in taxes overall. It's worth running the numbers on both scenarios including all taxes, not just focusing on the retirement contribution aspect.
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Connor Rupert
•But can't you deduct half of the self-employment tax on your personal return? Also with an S-Corp, don't you have to pay yourself a reasonable salary anyway? I thought you couldn't just take everything as distributions to avoid employment taxes.
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Sophie Footman
•You're right that you can deduct half of the self-employment tax on your personal return, which does offset some of the tax impact. Regarding S-Corps, yes, if you're an owner, you need to pay yourself a "reasonable salary" before taking distributions. But in this case, OP isn't the owner - her husband is. So if she's legitimately performing services for the S-Corp, they have flexibility in how they compensate her. They could choose either W2 or 1099 depending on the nature of the work and their tax planning needs. Each approach has different implications for retirement planning, taxes, and administrative requirements.
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Molly Hansen
Has anyone considered a Solo 401k instead of a SEP IRA for the self-employment income? With a Solo 401k, you can potentially contribute more than with a SEP IRA at the same income level because you can make both "employer" and "employee" contributions, even if you've already maxed your employee contributions at another job.
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Brady Clean
•I thought you couldn't do employee contributions to a Solo 401k if you've already maxed out at another employer? The $22,500 limit (for 2025) is per person across all 401k plans, not per employer, right?
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Mateo Silva
•You're absolutely correct! The $22,500 employee contribution limit for 2025 is per person across ALL 401(k) plans, not per employer. So if OP has already maxed out employee contributions at her W2 job, she cannot make additional employee contributions to a Solo 401(k) for her self-employment income. However, she could still make employer contributions to a Solo 401(k) based on her self-employment income (up to 25% of net self-employment earnings). But at that point, there's really no advantage over a SEP IRA since both would allow the same employer contribution limits. The SEP IRA is actually simpler to set up and maintain, so it would probably be the better choice in this situation.
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CosmicVoyager
Great discussion everyone! I'd like to add a few important considerations that might help with your decision: **Tax Planning Angle**: Don't forget about the QBI (Qualified Business Income) deduction with Option 1. If you take the 1099 route, you might be eligible for up to a 20% deduction on your self-employment income, which could significantly reduce your effective tax rate even after paying self-employment taxes. **Administrative Complexity**: Option 1 (1099) means you'll need to file Schedule C and deal with quarterly estimated taxes. Option 2 (W2) is administratively simpler since the S-Corp handles payroll taxes. **Future Flexibility**: If you choose Option 1 and your side income grows significantly in future years, you'll have more retirement savings options (SEP IRA, Solo 401k, etc.). With Option 2, you're limited to whatever retirement plan the S-Corp offers. **State Tax Considerations**: Some states have different treatment for self-employment income vs. W2 income, so make sure to factor in your state's tax laws. I'd recommend running the complete tax calculation for both scenarios (federal + state + SE tax - QBI deduction - retirement contributions) to see which gives you the better after-tax result. The retirement contribution opportunity is great, but the overall tax impact should drive your decision.
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Fatima Al-Rashid
•This is such a comprehensive breakdown - thank you! I hadn't even thought about the QBI deduction aspect. That 20% deduction could really make a difference in the overall tax picture. One question though - with the quarterly estimated taxes for Option 1, how do you handle that when you're also getting W2 income? Do you need to adjust your withholding at your main job or just make separate quarterly payments for the 1099 income? I'm worried about getting hit with underpayment penalties if I don't get the timing right. Also, regarding the state tax considerations you mentioned - are there any states where this decision would be particularly clear-cut one way or the other?
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Julia Hall
•@Fatima Al-Rashid Great questions! For quarterly estimated taxes with mixed income sources, you have a few options: **Option 1**: Increase your W2 withholding to cover the additional tax from your 1099 income. You can submit a new W-4 to your employer requesting additional withholding per paycheck. This is often easier than making quarterly payments. **Option 2**: Make quarterly estimated payments specifically for the 1099 income. You d'calculate the tax on just that income and pay 25% each quarter. **Option 3**: A combination - adjust W2 withholding for part of it and make quarterly payments for the rest. The key is making sure your total payments withholding (+ estimated equal) at least 90% of current year tax or 100% of last year s'tax 110% (if your prior year AGI was over $150k to) avoid penalties. Regarding state considerations, states like Texas, Florida, and Nevada with no income tax make the decision purely about federal implications. States with high income tax rates but favorable treatment of retirement contributions like (California might) favor the SEP IRA route. States with lower self-employment tax treatment or different QBI rules could swing the calculation either way. I d'definitely recommend running the numbers in a tax software or with a CPA for your specific state situation!
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Keisha Taylor
This is such a helpful discussion! I'm in a similar boat with mixed W2/1099 income and was completely overwhelmed by the retirement contribution rules. One thing I want to add is the importance of timing - if you're leaning toward Option 1 (1099 + SEP IRA), make sure you set up the SEP IRA before the end of the tax year. Unlike traditional and Roth IRAs which you can establish and fund until the tax filing deadline, SEP IRAs need to be established by December 31st (though you can fund them until the filing deadline). Also, has anyone dealt with the situation where your 1099 income varies significantly year to year? I'm wondering if it makes sense to set up the SEP IRA infrastructure even in lower income years, just to have it ready when you have a bigger 1099 year. The contribution limits scale with income, so you'd only contribute what makes sense each year, but having the account already established seems like it could be valuable for planning purposes. Thanks to everyone who shared their experiences - this thread has been more helpful than hours of googling!
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Yara Nassar
•Great point about the SEP IRA setup timing! I didn't know about the December 31st establishment deadline - that's definitely something to keep in mind for planning. Regarding variable 1099 income, I think setting up the SEP IRA infrastructure makes total sense even in lower income years. Most providers (Fidelity, Vanguard, etc.) don't charge account maintenance fees for SEP IRAs, so there's really no downside to having it ready. Plus, you're right that the contribution limits scale with income - in a low income year you might only contribute a few hundred dollars, but in a high income year you could max out at much higher amounts. One additional consideration for variable income: if you have a really good 1099 year, you might also want to look into whether you can make a Solo 401k election instead of or in addition to the SEP IRA, since Solo 401ks allow for higher total contributions when you have significant self-employment income (even though the employee contribution portion would still be limited if you've maxed out elsewhere). This thread has been incredibly educational - I feel like I actually understand these rules now instead of just being confused by IRS publications!
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Miguel Silva
This thread has been incredibly valuable! I'm a tax professional and wanted to add a few clarifications that might help: **Important correction on SEP IRA establishment timing**: Actually, SEP IRAs can be established AND funded up until the tax filing deadline (including extensions), not just by December 31st. This gives you more flexibility than some other retirement accounts. **Backdoor Roth considerations**: With Option 1 (1099 + SEP IRA), be aware that having a SEP IRA balance can complicate backdoor Roth IRA conversions due to the pro-rata rule. If you're in higher income brackets and rely on backdoor Roth strategies, this might influence your decision. **Employment classification risk**: Make sure the work you're doing for your husband's S-Corp truly qualifies for 1099 treatment vs W2. The IRS has specific guidelines about worker classification, and getting this wrong can lead to penalties and back taxes. Consider factors like who controls how/when/where the work is performed, whether you use your own equipment, etc. **Payroll tax savings with S-Corp**: While Option 1 gives you the SEP IRA opportunity, Option 2 (W2 from S-Corp) means the business pays half the FICA taxes, and you'd avoid self-employment tax entirely on that income. This could save you about $2,677 in taxes on $35k (7.65% employer portion of FICA vs 15.3% SE tax). The math really depends on your specific situation - income levels, state taxes, other deductions, and long-term retirement planning goals.
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Katherine Shultz
•Thank you for those important clarifications! As someone new to navigating retirement accounts with multiple income sources, this is exactly the kind of professional insight I needed. The correction about SEP IRA establishment timing is huge - I was worried I'd already missed the window for this year since we're getting close to year-end. Knowing I have until the filing deadline gives me much more time to make an informed decision. The employment classification point is really important too. I hadn't fully considered whether my work for my husband's S-Corp would truly qualify as independent contractor work versus employee work. We definitely need to review those IRS guidelines carefully to make sure we're not setting ourselves up for problems down the road. One follow-up question: when you mention the payroll tax savings with Option 2 (W2 from S-Corp), are there any minimum salary requirements we need to be aware of? I've heard that S-Corp owners need to pay themselves "reasonable compensation" as W2 employees before taking distributions, but does that apply to non-owner employees like me as well? This thread has been more educational than any tax publication I've tried to read!
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Emma Davis
•@Katherine Shultz Great question about minimum salary requirements! For non-owner employees of an S-Corp, there typically aren t'the same reasonable "compensation requirements" that apply to owner-employees. The IRS is mainly concerned about S-Corp owners who try to avoid payroll taxes by taking everything as distributions instead of salary. However, there are still some considerations: the compensation should be reasonable for the actual work being performed you (can t'pay someone $100k for filing papers once a week ,)and all compensation for services rendered should generally go through payroll rather than being disguised as distributions or other payments. One additional thing to consider with the W2 option: you d'be eligible for unemployment benefits if the work arrangement ends, whereas 1099 contractors typically aren t.'This might not be a major factor in your decision, but it s'worth noting. Also, @Miguel Silva raised an excellent point about the backdoor Roth complications with SEP IRAs. If you re doing'backdoor Roth conversions now or might need to in the future due to (income limits on direct Roth contributions , having)a SEP IRA balance makes that strategy much more complex and potentially less beneficial due to pro-rata rules. This really highlights why it s worth'running the complete analysis - retirement contributions, current taxes, future tax planning strategies, and administrative complexity all factor into the optimal choice.
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Layla Mendes
This has been such an incredibly thorough discussion! As someone who's been lurking in tax forums for years trying to understand these complex retirement account rules, I'm amazed by the quality of advice here. I wanted to add one more consideration that might be relevant: **state-specific retirement account protections**. Different states have varying levels of creditor protection for SEP IRAs versus employer-sponsored plans. If asset protection is a concern in your situation, this could be another factor in your decision between Option 1 and Option 2. Also, for anyone following along who might be in a similar situation - I learned the hard way that you should **document the business purpose and nature of work** if you go with Option 1 (1099). Keep detailed records of what services you're providing, when, and how the compensation was determined. The IRS can and does scrutinize family business arrangements more closely, especially when there are tax benefits involved. One last tip: consider setting up a separate business checking account for the 1099 income if you go that route. It makes tracking expenses and income much easier for tax purposes, and helps establish that this is legitimate business activity rather than just shifting money between spouses for tax benefits. Thanks to everyone who shared their expertise - this thread should be bookmarked for anyone dealing with mixed W2/1099 income and retirement planning!
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Yuki Tanaka
•This is such excellent additional advice! The point about state-specific retirement account protections is something I never would have thought to consider. I'm definitely going to research how my state handles SEP IRA vs employer plan protections before making my decision. The documentation tip is really valuable too. I can see how family business arrangements would get extra scrutiny from the IRS, especially when there are significant tax benefits at stake. Better to be over-prepared with documentation than to have to scramble if there are ever questions. The separate business checking account suggestion makes a lot of sense for the 1099 route. It would definitely help with bookkeeping and make it clear that this is legitimate business income rather than just moving money around for tax purposes. One question that occurred to me reading through all these great responses: if I go with Option 1 and set up a SEP IRA, should I be concerned about having "too many" retirement accounts? I already have a 401k at my main job, a traditional IRA from an old employer rollover, and a Roth IRA. Would adding a SEP IRA make things overly complicated for management and rebalancing purposes, or is that not really a concern? Thank you to everyone who has contributed to this discussion - I feel so much more informed about my options now!
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