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If you want to avoid calling altogether, you can also check your tax account online at IRS.gov. Create an account (if you don't already have one) and look at your account balance. It will show the actual amount you owe. If it only shows one penalty amount of $217.35, then that confirms you only need to pay once. The online account is pretty accurate and updates within a few days of notices being sent out. Might save you the hassle of calling.
Thanks for this suggestion! I tried checking the online account but for some reason it's only showing our most recent return info, not this penalty. Is there a specific section where penalties would show up?
The penalties should show up under the "Account" tab after you log in. Once there, look for a section called "Balance Details" or "Amount You Owe." It can take up to 5 business days for new penalties to appear in the system after notices are mailed. If you're not seeing it there, it's possible the penalty is still processing in their system. The other possibility is that if these notices were just sent, the online system hasn't been updated yet. The IRS isn't exactly known for their speedy technological updates!
Just want to add - make sure to keep BOTH notices! Even if you only pay once, keep both in your records. The IRS sometimes has one department that doesn't know what the other is doing, and you might need to prove later that you received duplicate notices if they try to say you didn't pay one of them. Also check the payment vouchers carefully - sometimes they have different payment processing codes even if they're for the same penalty. In that case, use the voucher from the notice with the Caller ID.
Another perspective: I have three dry cleaning locations and used a tax preparer for years. Switched to a CPA two years ago and my tax bill dropped by nearly $7500 the first year. The difference? My CPA understood how to properly categorize equipment depreciation across multiple locations, helped restructure my business entity, and identified legitimate meal and vehicle deductions I was missing. For food businesses, there are TONS of industry-specific deductions a specialist might know. One tip: don't just get any CPA. Find one with restaurant/food service experience. They know the specific deductions and challenges in your industry.
Did your CPA also help you throughout the year or just at tax time? And how much more did you end up paying compared to your tax preparer?
My CPA definitely helps year-round. He reviews my books quarterly and advises on timing major purchases for maximum tax advantage. He's also helped me set up proper accounting for each location to track profitability separately. I pay about $2,200 per year compared to $650 for my former tax preparer, but with the tax savings and business insights, it's been one of my best investments. The first consultation was free, and he clearly explained how his strategies would save more than his fee.
One thing nobody has mentioned - ask your current tax preparer if they're an Enrolled Agent (EA). Some tax preparers have this credential, which means they're federally licensed and can represent you before the IRS just like a CPA. If your current preparer is an EA with small business experience, they might be perfectly qualified and cheaper than a CPA.
In addition to the tools others mentioned, don't forget you'll need to handle your state unemployment taxes and reporting for your S-Corp employees (including yourself if you take a salary). Each state has different systems, but most have online portals now. For 1099s, remember the deadline is January 31st, so that should be your first priority after getting payroll wrapped up. QuickBooks can generate these, but you need to make sure your vendor records include tax ID numbers. If you're really in a time crunch, consider hiring a bookkeeper just to help with year-end instead of a full CPA. They're usually more available and less expensive, and can handle the compliance pieces while you focus on tax planning.
Thanks for mentioning the state unemployment taxes - I completely forgot about those! Do you know if the QuickBooks payroll service automatically handles those filings or is that something I need to set up separately? And any recommendations on finding a bookkeeper just for year-end stuff? Would I search for someone who specializes in "year-end closing" specifically?
QuickBooks Payroll handles federal and most state payroll taxes, but whether it includes unemployment taxes depends on which tier of service you have. With the higher tiers, they'll calculate and file these automatically, but with basic service you might need to handle filing yourself even if they calculate the amounts. For finding a year-end bookkeeper, I'd recommend searching for someone who specializes in "small business bookkeeping" and specifically mention you need "year-end closing and tax prep assistance." Many bookkeepers offer one-time cleanup services or quarterly/annual packages rather than requiring ongoing monthly work. Check the American Institute of Professional Bookkeepers directory or platforms like Upwork where you can filter for people with QuickBooks and tax prep experience.
Just a quick heads up on the 1099 forms - they've changed significantly in recent years. What used to be reported on 1099-MISC for contractor payments now goes on 1099-NEC (Non-Employee Compensation). 1099-MISC is still used but for different types of payments. Also if you're doing this yourself, don't buy the forms from office supply stores. You can e-file directly through the IRS FIRE system if you have less than 250 forms, or use a service like Tax1099.com which is what I use for my small business. Costs about $3.50 per form but saves tons of time.
Does QuickBooks handle the e-filing of 1099-NEC forms? I've been using QB for years but always had my accountant handle the actual filing part.
Pro tip: If you're waiting for the 2025 forms to appear on payusatax.com, you can also use EFTPS.gov (Electronic Federal Tax Payment System). It's free and run directly by the Treasury. The downside is you have to enroll ahead of time and they mail you a PIN, which takes about a week. But they usually update for the new tax year by January 2nd, sometimes even before New Year's. I switched from payusatax to EFTPS three years ago and never looked back. No more fees!
Do you need to set up EFTPS separately for your business and personal taxes? I have both.
You can use the same EFTPS account for both business and personal taxes. When you make a payment, you select the tax form type and enter your tax ID (SSN for personal, EIN for business). The system keeps track of different payment types separately, so you can pay individual 1040-ES payments and business 941/940 payments through the same account. Really convenient if you have both personal and business tax obligations.
Has anyone had issues with payusatax.com payments not being properly credited to their account? Last year I made my payment on January 12th and the IRS didn't show it as received until February 3rd. Caused me a bunch of headaches.
Yes! Same problem. I switched to DirectPay on the IRS website instead (when it works) or EFTPS. Payusatax was always slow to credit the payment even though they took the money from my account right away.
Freya Andersen
Former university bursar office employee here! This happens ALL THE TIME. Schools are required to report payments in the calendar year they're received, not the academic year they apply to. Most likely explanation: you either made a payment in January 2021 for your final semester, or there was some kind of adjustment to your account in 2021 (refund, late scholarship, etc). Box 1 showing $875 means money changed hands somehow. Call the bursar's office (not financial aid) and ask for a detailed explanation of what triggered the 1098-T. They can pull up your account history and tell you exactly what happened. If it truly was issued in error, they can issue a corrected form. But honestly, it's probably accurate according to IRS reporting rules, just confusing from your perspective.
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Amina Bah
ā¢Thanks for the insider perspective! Should I be worried about this holding up my tax refund? I was planning to file next week and really counting on that money soon.
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Freya Andersen
ā¢You shouldn't have any delay in your refund as long as you address the 1098-T properly on your return. If you can contact the university quickly and get clarification before you file, that's ideal. If not, you can still file and include the information from the 1098-T as reported. If you later find out it was an error and get a corrected form, you can always file an amended return. But ignoring it completely could potentially flag your return for review, which would definitely delay your refund. So it's better to include it now based on what you have and make corrections later if needed.
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Omar Zaki
Quick question - what tax software are people using to handle these kinds of education credit issues? I've got a similar situation with a 1098-T from a school I transferred from, and TurboTax is giving me confusing results.
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CosmicCrusader
ā¢I've had better luck with H&R Block's online software for education stuff. Last year I had three 1098-Ts (don't ask lol) and TurboTax kept getting confused, but H&R Block handled it fine. They have a specific education interview section that walks through all the weird edge cases.
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