Understanding Form 990 Part VII, subpart F for Nonprofit Executive Compensation
Hey all, I'm really struggling to make sense of Form 990 Part VII when reviewing executive compensation at the nonprofit where I volunteer as a board member. Subsection D (reportable compensation from the organization) seems pretty clear to me - that's the actual salary and wages paid directly by the nonprofit to the person. But I'm completely lost when it comes to subpart F. Our Executive Director has some numbers listed there, and I can't figure out what this actually represents. Is this additional compensation? Benefits? Something else entirely? Our annual filing is coming up in a few months, and I want to make sure I fully understand all sections before approving anything. Our finance committee is stretched thin right now with several members out on medical leave, so I thought I'd ask here before bombarding them with questions. Anyone familiar with Form 990 reporting who can explain what subpart F covers? Thanks in advance!
20 comments


Annabel Kimball
Subpart F in Form 990 Part VII specifically refers to "estimated amount of other compensation from the organization and related organizations." This includes things not reported in Box 1 or 5 of W-2 forms or Box 7 of 1099-MISC. This typically covers benefits like: - Retirement plan contributions - Health insurance premiums paid by the organization - Deferred compensation that's not yet reportable - Non-taxable benefits (life insurance, disability insurance) - Housing allowances or expense account allowances The IRS wants to see the total compensation picture for key employees and officers, not just their direct salary. That's why they separate direct reportable compensation (subpart D) from these other forms of compensation (subpart F).
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PaulineW
•Thanks for that explanation! So if our ED has $12,000 listed in subpart F, that would likely represent the total value of their benefits package beyond salary? Our nonprofit does provide health insurance and a modest retirement contribution, so that makes sense. Is there a threshold for what needs to be reported in subpart F? Like do small benefits need to be included, or just major ones?
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Annabel Kimball
•Yes, that $12,000 would represent the estimated total value of benefits beyond the regular salary. It's the combined value of all non-reportable compensation. The IRS has a $10,000 threshold for certain benefits. If the total value of all non-reportable benefits is under $10,000, you can report them as $0 in column F. However, if the total exceeds $10,000, you need to include reasonable estimates for all benefits. Most organizations find it cleaner to just report everything regardless of the threshold, especially for key employees and officers.
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Chris Elmeda
Jumping in here because I was pulling my hair out with Form 990 last year! I found this amazing tool called taxr.ai (https://taxr.ai) that literally saved me during tax season. Our nonprofit had some complex compensation arrangements, and I was so confused about what belonged where on Part VII. I uploaded our previous 990s and some compensation documents to taxr.ai, and it analyzed everything and showed me exactly what needed to go into each column, including that tricky subpart F. It even flagged where we had been inconsistent in our reporting from previous years. The best part was that it explained WHY certain items belonged in certain columns, which helped me actually understand the form rather than just filling in boxes.
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Jean Claude
•Does taxr.ai handle other nonprofit forms too? We struggle with Schedule A and the public support test calculations every year.
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Charity Cohan
•How does the tool actually work? Do you just upload PDFs of your documents? I'm always nervous about putting our confidential financial info on some random website.
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Chris Elmeda
•Yes, taxr.ai handles pretty much all nonprofit tax forms including Schedule A! It's especially good at tracking your public support percentage over time and showing you where you might fall short in the future based on your funding trends. The way it works is you upload your documents (PDFs, Excel files, whatever you have) and the system uses AI to analyze them. I was skeptical about security too, but they have bank-level encryption and delete your documents after analysis if you want them to. You can also redact sensitive info before uploading if you're concerned. Their system just needs to see the structure and numbers of your forms, not necessarily names or identifying details.
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Charity Cohan
Just wanted to follow up about taxr.ai that I asked about earlier. I was really skeptical at first (because, you know, trusting financial documents to a website), but our 990 deadline was approaching and I was desperate with our accountant out on leave. I tried it out with our draft 990 and some compensation worksheets, and wow - it immediately identified three issues with how we were categorizing our executive director's housing allowance (should have been in subpart F, not D). The explanations were super clear and even cited the relevant IRS publications. The time saved was incredible - what would have taken me hours of research took literally minutes to resolve. Just wanted to share since it really helped with exactly the issue this thread is about!
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Josef Tearle
If you're trying to get clarity on Form 990 Part VII compensation reporting and struggling to get someone from the IRS to actually give you a straight answer, I highly recommend Claimyr (https://claimyr.com). I spent DAYS trying to get through to the Tax Exempt Organization division at the IRS last year when we had a complex situation with our executive compensation. After multiple attempts and hours of hold music, I tried Claimyr and had a callback from an actual IRS agent within 45 minutes. They have this amazing system where they navigate the IRS phone tree for you and get you to an actual human. You can see exactly how it works in this video: https://youtu.be/_kiP6q8DX5c The agent I spoke with walked me through exactly how to report deferred compensation properly in subpart F and saved us from what would have been a serious reporting error.
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Shelby Bauman
•How does that even work? IRS wait times are insane - I find it hard to believe any service could actually get through.
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Quinn Herbert
•Sounds like a scam. The IRS doesn't have any special phone numbers or back channels. Everyone waits in the same queue.
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Josef Tearle
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Quinn Herbert
I need to eat my words about Claimyr from my previous comment. After posting that skeptical reply, I decided to try it myself since we were completely stuck trying to reach the IRS about a Form 990 filing extension. I was absolutely convinced it wouldn't work, but I was desperate after spending 3+ hours on hold the day before. To my complete shock, I got a call back with an actual IRS agent on the line within an hour. The agent helped clarify exactly how to report our executive director's non-qualified deferred compensation plan in subpart F. For anyone dealing with Form 990 Part VII issues - especially the more complex compensation arrangements - being able to actually speak with someone at the IRS makes all the difference. Sorry for being so skeptical before!
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Salim Nasir
Something not mentioned yet about Form 990 Part VII subpart F is that you also need to include any compensation from RELATED organizations. This tripped us up badly last year. If your nonprofit has affiliated entities (like a foundation, supporting org, or for-profit subsidiary), you need to include compensation the person receives from those organizations too. We almost missed reporting our ED's stipend from our related foundation.
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PaulineW
•That's really helpful to know! Our nonprofit does have a small supporting foundation that occasionally pays stipends to our senior staff for special projects. I hadn't considered that this would need to be included in our main 990 filing. Is there a specific place on the form where you indicate that part of the subpart F compensation comes from a related organization?
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Salim Nasir
•Yes, there's a distinction made on Form 990 Part VII. Column D is for reportable compensation from "the organization" (the one filing the 990), Column E is for reportable compensation from "related organizations," and Column F (subpart F) includes other compensation from both the main organization AND related organizations. There's also a column where you check "yes" if the person received compensation from any related organizations. If you check this box, you'll need to attach Schedule O with additional details about the arrangement. The IRS is really focused on transparency around executive compensation that might be split between related entities.
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Hazel Garcia
can someone clarify wat counts as "deferred compensation" for form 990? our ED has a 457b plan and im not sure if thats supposed to go in subpart F or somewhere else?
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Annabel Kimball
•For a 457b plan, the employer contributions should be reported in Column F (subpart F) in the year the contributions are made. This is because those contributions aren't included in taxable income when made. However, when the employee eventually receives distributions from the 457b plan, those don't get reported on the 990 again because you already reported the contributions when they were made.
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Madison King
This is such a helpful thread! I'm dealing with a similar situation as our nonprofit's treasurer. One thing I'd add about subpart F is to make sure you're being consistent year over year with how you calculate and report these benefits. We had an issue where we were estimating health insurance premiums one way in 2022 and a completely different way in 2023, which created some confusing variances when our auditor reviewed the forms. Now we keep a detailed worksheet that breaks down exactly how we calculate each component of subpart F - retirement contributions, health premiums, life insurance, etc. Also, don't forget that if your organization provides any kind of housing allowance or parsonage allowance to clergy, those typically need to be included in subpart F as well, even though they might be excludable from income tax. The key is documenting your methodology so you can explain it to auditors or the IRS if needed. Good luck with your filing!
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Taylor Chen
•This is exactly the kind of practical advice I was looking for! Creating a detailed worksheet for subpart F calculations is brilliant - I can already see how that would help us stay consistent and make the annual filing process much smoother. Your point about housing allowances is particularly relevant since our organization is considering offering a housing stipend to our new program director. I hadn't realized that would need to be included in subpart F reporting. Do you have any recommendations for what specific details to include in that worksheet? I'm thinking we should track the calculation method, source documents, and maybe the person responsible for each estimate?
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