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Malik Davis

How will my IRA withdrawal be taxed if investments lost value?

I've got some stocks in my rollover IRA that I originally purchased with after-tax dollars. Last year (2024) I decided to sell some stocks that weren't performing well and took the money out of the account. When tax time came around, I was shocked to find out I had to pay taxes on the withdrawn amount even though these investments actually LOST value! I sold them for less than I paid originally. How does this make any sense? Why am I paying taxes on money that I already paid taxes on AND lost some of in the process? It feels like I'm getting hit twice. Has anyone else dealt with this or have insight on why the IRS does this? Thanks for any help!

The tax treatment of IRA withdrawals can definitely be confusing! What's happening here is that with traditional IRAs (including rollovers), ALL withdrawals are taxed as ordinary income, regardless of whether the investments gained or lost value. The IRS basically treats it as if you're taking out pre-tax dollars. If you made non-deductible (after-tax) contributions to your IRA, you should have filed Form 8606 for those years to track your "basis" in the IRA. This form establishes what portion of your IRA has already been taxed. Without this documentation, the IRS assumes all withdrawals are fully taxable. Each withdrawal from a traditional IRA with both pre-tax and after-tax money is treated as partly taxable and partly return of basis, based on a pro-rata calculation of all your IRAs combined.

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Malik Davis

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Thanks for explaining, but I'm still confused. If I bought the stocks with after-tax money, shouldn't I only be taxed on any gains? And since these actually lost value, shouldn't I be able to claim a loss? Also, I don't remember ever filing a Form 8606 when I made the contributions.

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The key thing to understand is that IRAs are "tax-deferred accounts" where the original tax treatment depends on whether you took a deduction when contributing. If you contributed after-tax dollars without filing Form 8606, the IRS has no record that you paid tax on this money already. Without Form 8606 documentation, the IRS assumes all withdrawals are fully taxable. You can't claim investment losses inside an IRA - that's one of the trade-offs of the tax-advantaged account. You might want to look back at your records to see if those contributions were actually deducted on your taxes in previous years, in which case they were pre-tax, not after-tax as you thought.

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Ravi Gupta

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I was in a similar situation last year with trying to figure out how my IRA withdrawals would be taxed. I found this tool called taxr.ai (https://taxr.ai) that helped me sort through all my old tax documents and track my IRA basis. It uses AI to analyze your past tax returns and helps determine if you've made after-tax contributions that weren't properly reported on Form 8606. I was able to upload my old returns and it flagged where I should have filed 8606 forms and even helped me prepare them for amendment.

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GalacticGuru

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How accurate is this tool? I've got a mess of IRA contributions over 15 years and some were deducted, some weren't. Does it actually show you where to find this info on old returns or just make guesses?

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I'm intrigued but skeptical. How does it handle situations where you've rolled over 401ks into IRAs multiple times? My financial history is complicated and I'm worried about trusting an AI with something this important.

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Ravi Gupta

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It's surprisingly accurate. The system scans your past returns line by line and identifies specifically where deductions were taken or not taken. It doesn't guess - it extracts the exact numbers from your documents. For complex situations with multiple rollovers, it creates a timeline of all your retirement account transactions based on your tax returns and 1099-Rs. It helped me track three different 401k rollovers and identified where my basis was getting lost in the process. The step-by-step breakdown made it really clear what was happening with my money.

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GalacticGuru

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Just wanted to follow up - I tried taxr.ai after seeing the suggestion here and it was super helpful! I uploaded my last 10 years of returns and it found two years where I made non-deductible contributions but never filed the 8606 form. The tool helped me prepare the missing forms and showed exactly how much of my IRA is after-tax money. Turns out about 22% of my IRA balance shouldn't be taxed when I withdraw it! Definitely recommend if you're in a similar situation with missing documentation.

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Omar Fawaz

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If you're having trouble getting answers directly from the IRS about your specific situation, I used a service called Claimyr (https://claimyr.com) that got me through to an actual IRS agent in about 15 minutes instead of waiting on hold for hours. You can see how it works in this video: https://youtu.be/_kiP6q8DX5c. The agent I spoke with helped me understand my IRA basis calculation and confirmed I could file amended returns with Form 8606 for previous years where I made after-tax contributions.

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Wait so this service just gets you to the front of the IRS phone queue? How does that even work? Sounds too good to be true.

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This seems sketchy. Why would I pay for something I can do myself for free? The IRS eventually answers if you're patient enough. And what guarantee is there that they'll actually have the right answers to complex IRA basis questions?

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Omar Fawaz

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It doesn't put you at the "front of the queue" - that would be cutting in line. What it does is make the calls for you and only connects you once a human agent answers. No more waiting on hold for hours. The value isn't just getting through faster - it's that you can actually speak with a live IRS agent who has access to your tax records. When I called about my IRA basis question, the agent was able to look up my filing history and confirm exactly which years I needed to file Form 8606 for. They walked me through the exact calculation I needed to determine my non-taxable portion. Much better than guessing or relying on possibly outdated online articles.

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I'm eating crow here... after complaining about Claimyr in my earlier comment, I got frustrated enough with the IRS hold times that I tried it yesterday. Got connected to an agent in about 20 minutes! The agent confirmed I could file amended returns with Form 8606 for years I made after-tax contributions to establish my basis. He even emailed me the specific IRS publication sections relevant to my situation. Completely changed my understanding of how my IRA withdrawals should be taxed going forward.

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Diego Vargas

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Here's another important point - if you rolled over a 401k that contained after-tax contributions, those should have been tracked separately. Many people don't realize that after-tax 401k contributions should be rolled into a Roth IRA, not a traditional IRA, to maintain their tax status correctly. If you mixed them into a traditional IRA, you've created this exact tax complexity.

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Malik Davis

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That might be exactly what happened! Part of the money in my rollover IRA came from an old 401k that had some after-tax contributions. The financial advisor who helped me with the rollover never mentioned anything about separating that money. Is there any way to fix this now?

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Diego Vargas

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Unfortunately, once the money has been commingled in a traditional IRA, you can't easily separate it. Your best option now is to properly track your basis by filing Form 8606 (if you haven't already). Your after-tax contributions become your "basis" in the IRA. When you take distributions in the future, a portion will be tax-free based on the ratio of your basis to the total value of all your IRAs. It's a pro-rata calculation, so you can't just withdraw the after-tax portion separately. This is one reason tax pros recommend keeping after-tax funds separate whenever possible.

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Has anyone used TurboTax to handle this situation? I'm trying to file my own taxes but it's not clear how to enter my IRA withdrawal that was partially after-tax.

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StarStrider

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TurboTax can handle this but you need to enter a Form 8606 first. Look under the Deductions & Credits section for "IRA Contributions" and there should be an option for non-deductible contributions. It will then calculate the taxable portion of your withdrawal correctly.

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Javier Cruz

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This is a really common confusion that trips up a lot of people! The key thing to understand is that traditional IRAs (including rollover IRAs) don't track individual investments - they're treated as one big bucket where ALL withdrawals are taxed as ordinary income regardless of performance. When you withdraw from a traditional IRA, you can't claim capital losses like you would in a regular taxable account. That's actually one of the trade-offs of the tax-deferred treatment. The IRS doesn't care if specific stocks lost value - they just see it as you taking money out of a tax-deferred account. If you truly made after-tax contributions and never filed Form 8606, you definitely want to look into that. You might be able to file amended returns to establish your basis properly. As others mentioned, without that documentation, the IRS assumes everything is fully taxable. Also double-check whether those original contributions were actually after-tax or if you took deductions for them in previous years. Sometimes people forget they deducted IRA contributions on their tax returns, which would make them pre-tax money.

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Lilah Brooks

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This is such a helpful breakdown! I think a lot of people (myself included) get confused because we think of IRAs like regular investment accounts where losses can offset gains. The "one big bucket" analogy really clarifies why the IRS treats all withdrawals the same way regardless of individual stock performance. Your point about double-checking whether those original contributions were actually deducted is crucial too. It's easy to forget taking IRA deductions years ago, especially if you were getting refunds. I'm going to dig through my old returns to see if I claimed deductions I forgot about before assuming everything was after-tax money.

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One thing that might help clarify your situation is to request an IRA basis statement from your custodian (the company holding your IRA). They should have records of any after-tax contributions that were properly reported when the money was rolled over or contributed. Also, if you're dealing with a rollover IRA from a previous employer's 401k, check if you have any old 401k statements that show after-tax contributions. Sometimes the 1099-R form from when you did the rollover will indicate if any portion was after-tax money (it would be coded differently). The frustrating reality is that the IRS puts the burden on taxpayers to track and document their after-tax contributions. Without proper Form 8606 filings, you're essentially losing the tax benefit of that after-tax money. But don't give up - many people have successfully filed amended returns to recover this basis, especially if they can document the original after-tax contributions through old pay stubs or 401k statements.

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Eleanor Foster

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This is really solid advice about requesting the IRA basis statement! I wish I had known about this earlier. I've been trying to piece together my contribution history from memory and scattered paperwork, but the custodian should have better records. One question though - if the rollover happened years ago and the after-tax portion wasn't properly coded or separated at the time, would the custodian's records still show it correctly? I'm worried that if my financial advisor didn't handle the rollover properly back then, the custodian might not have the right information either. Also, for anyone else reading this - definitely keep better records going forward! This whole situation has taught me to document everything related to retirement accounts, especially any after-tax contributions.

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Grace Lee

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You raise a great point about custodian records potentially being incomplete if the rollover wasn't handled properly initially. Unfortunately, if the after-tax portion wasn't correctly identified during the original rollover process, the custodian's current records might not reflect the true basis. This is where those old 401k statements and pay stubs become really valuable - they can serve as independent documentation of your after-tax contributions even if the rollover paperwork was botched. The IRS generally accepts contemporaneous records like pay stubs showing after-tax 401k contributions as proof for establishing basis on amended returns. Your advice about keeping better records is spot on! I learned this lesson the hard way too. Now I photograph every retirement account statement and keep a simple spreadsheet tracking all contributions and their tax status. It's a small effort that can save thousands in taxes down the road. For anyone dealing with this situation, don't let a messy rollover from years ago discourage you from pursuing your rightful basis. The IRS has procedures for these situations, and with proper documentation, you can often recover the tax benefit of your after-tax contributions even years later.

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