How to report capital gains for a single member LLC - individual or Schedule C?
So my accountant completely disappeared on me right before tax season (thanks a lot!) and now I'm trying to figure out how to file myself. I have a single member LLC that made some long term and short term capital gains from stock trades this past year. The brokerage sent me a 1099-B and Form 8949 with all my transactions listed out. I'm using freetaxusa to file, and I'm confused about where these gains should go. Do I report these capital gains in the same section where I'd put my personal individual stock gains, or do they need to go on Schedule C since they were made through my LLC? The brokerage account is in my LLC's name, if that matters. This is my first year dealing with capital gains through my business and I'm totally lost without my accountant. Any help would be really appreciated!
27 comments


Emma Thompson
Your LLC's tax treatment depends on how you've set it up with the IRS. Since you mentioned it's a single-member LLC, it's likely treated as a "disregarded entity" for tax purposes by default, unless you've elected to be taxed as a corporation. For a disregarded entity (the default for single-member LLCs), your capital gains from stock trades would be reported on your personal tax return, not on Schedule C. You'd report these on Schedule D and Form 8949, just as you would report personal investment gains. The income "passes through" the LLC to you personally. Schedule C is specifically for business income and expenses from self-employment or sole proprietorships - like if your LLC was selling products or services. Investment activity, even if done through an LLC, generally doesn't go on Schedule C.
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Malik Davis
•But what if the LLC's primary business activity is actually trading stocks? Like if that's what the business does to make money? Wouldn't that change where you report it?
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Emma Thompson
•That's an excellent question. If the LLC's primary business activity is trading securities (meaning you're a day trader conducting a substantial number of trades as a business), then the situation changes. In that case, you might be considered a "trader in securities" by the IRS and could potentially report the activity on Schedule C. However, the IRS has very specific requirements to qualify as a trader rather than an investor. You generally need to: trade substantially and continuously, seek to profit from short-term market swings rather than dividends/interest/capital appreciation, and have trading be your primary business activity. Most people who buy and sell stocks, even frequently, are considered investors rather than traders in the eyes of the IRS.
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Isabella Santos
I was in literally the same boat last year! My account quit with no notice and I was stuck trying to figure out my LLC taxes. I tried several online forums and got conflicting advice until I found this AI tax assistant at https://taxr.ai that helped me sort through my 1099-B forms and figure out exactly where to report everything. It analyzed my LLC structure and confirmed I was a disregarded entity, then guided me through reporting the capital gains on my personal return instead of Schedule C. Saved me hours of confusion and probably prevented some costly mistakes too.
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StarStrider
•Did it actually look at your specific LLC documents? I'm wondering if this would work for me since my LLC is taxed as an S-Corp.
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Ravi Gupta
•How's it different from just asking ChatGPT? Not trying to be rude but there's so many AI tools now I'm skeptical about which ones actually know tax stuff vs just making things up.
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Isabella Santos
•It asked me to upload my LLC formation documents and previous tax returns, then it specifically identified where in my operating agreement it showed I was a disregarded entity. It explained that since I never filed Form 8832 to elect different tax treatment, the default single-member LLC rules applied to me. For S-Corps, it's definitely different since you've made a specific election with the IRS. The tool actually has a separate workflow for entities taxed as S-Corps that would apply to your situation with different forms and reporting requirements.
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StarStrider
Following up on my question about taxr.ai - I actually tried it for my S-Corp situation and it was super helpful! It immediately recognized my LLC was taxed as an S-Corp based on my docs and gave me completely different guidance than what was mentioned for disregarded entities. It showed me that my capital gains needed to go on my 1120S and flow through to my K-1, not directly on my personal return. I wouldn't have caught that otherwise! Definitely saved me from a potential audit headache.
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Freya Pedersen
If you're stuck and need to talk to an actual IRS agent about your LLC capital gains issue (I needed to last year), try https://claimyr.com - they got me connected to an IRS representative in about 15 minutes when I had been trying for DAYS. There's a video showing how it works: https://youtu.be/_kiP6q8DX5c My issue was that I had both personal capital gains AND LLC capital gains from the same brokerage, and I needed clarification on how to separate them properly. The IRS agent walked me through exactly how to handle both on my return.
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Omar Hassan
•Wait so this is just a service that calls the IRS for you? Couldn't you just call them yourself? What am I missing here?
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Chloe Anderson
•Yeah right. There's no way they got you through to the IRS in 15 minutes. I've literally spent HOURS on hold multiple times this year. If this actually works I'll eat my hat.
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Freya Pedersen
•It's not just calling for you - they use some technology that navigates the IRS phone tree and holds your place in line. You only get connected when an actual agent picks up. I don't have to waste hours listening to hold music. It's absolutely legit. The IRS only answers something like 10% of calls during busy season, and the average wait time is over 90 minutes if you do get through. Using their system, I got connected in 15 minutes while I went about my day. Once the agent was on the line, I got a call and was connected immediately.
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Chloe Anderson
I stand completely corrected about Claimyr. I tried it yesterday out of desperation after getting disconnected twice trying to reach the IRS myself about my LLC capital gains question. Got connected to a surprisingly helpful agent in about 20 minutes. The agent confirmed what others here said - since my single-member LLC is a disregarded entity, the capital gains go on my personal return using Schedule D and Form 8949. They also explained I needed to keep my business assets and personal investment assets separate even though they're taxed similarly. Would've taken me days to get this info without the service.
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Diego Vargas
Sorry if this is a dumb question but why would anyone even hold investments in an LLC if they're just going to be taxed on your personal return anyway? What's the advantage?
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CosmicCruiser
•It's not for tax advantages - it's for liability protection. If your LLC gets sued, your personal assets outside the LLC are typically protected. But if you hold investments in your personal name and get sued, those could be at risk. Plus some businesses reinvest profits into securities temporarily before reinvesting in the business.
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Diego Vargas
•Oh that makes a lot of sense! I never thought about the liability aspect. So even though the tax treatment is the same, there's still a benefit to having the investments in the LLC structure. Thanks for that explanation, it's really helpful for planning my own business finances.
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Anastasia Fedorov
I actually spoke with two CPAs about this exact situation for my real estate investment LLC. For a single-member LLC (disregarded entity), you report all gains on your personal Schedule D with Form 8949, NOT on Schedule C. However, if you elected to be taxed as a corporation, the reporting would be completely different. Without that election, the IRS essentially ignores the LLC for tax purposes, and you report everything as if you personally owned the investments.
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Javier Mendoza
•Thank you everyone for the helpful responses! Just to follow up, I did check my LLC paperwork and I never filed to be treated as a corporation, so I'm definitely a disregarded entity. I went ahead and entered all the capital gains in the personal investment section in FreeTaxUSA rather than in the business section. One thing I noticed is that FreeTaxUSA automatically pulled the info from my 1099-B once I entered my LLC's EIN, but it still put everything on Schedule D which seems correct based on your answers. Just wanted to share in case anyone else has the same issue!
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Jibriel Kohn
That's great that you got it sorted out! Just want to add one important note for anyone else reading this - make sure you're keeping detailed records of which trades were made through your LLC versus any personal investment accounts you might have. Even though they're reported on the same Schedule D, you'll want to be able to distinguish them if the IRS ever asks questions. Also, since your LLC is a disregarded entity, you might want to consider whether you need to make quarterly estimated tax payments for next year if these capital gains are substantial. The IRS expects you to pay taxes throughout the year, not just at filing time, especially if you owe more than $1,000. Good luck with the rest of your filing!
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Gianna Scott
Just wanted to add another perspective as someone who dealt with this same issue last year. Even though your LLC capital gains go on your personal Schedule D as a disregarded entity, don't forget about state tax implications! Some states treat LLC investments differently than federal tax law. In my case, my state required me to file a separate LLC information return even though the LLC was disregarded for federal purposes. The capital gains still flowed through to my personal state return, but I had to report the LLC's activity separately. I'd recommend checking your state's specific requirements - each state handles disregarded entities differently. Some states don't recognize the federal disregarded entity election and may require separate filings or have different reporting requirements. FreeTaxUSA should handle most of this automatically, but it's worth double-checking your state's rules to make sure you're not missing any required filings. The last thing you want is to get a notice from your state tax department after thinking you're all done!
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Nina Chan
•This is such an important point that I wish more people knew about! I learned this the hard way when I got a notice from my state saying I missed filing an LLC annual report, even though my LLC was disregarded for federal taxes. My state (California) required me to file Form 568 for the LLC and pay a minimum franchise tax, plus I had to report the capital gains on my personal state return. The federal and state treatments were completely different, which was super confusing. I ended up having to amend my state return and pay penalties because I assumed the disregarded entity treatment applied to state taxes too. Definitely worth checking with your state's tax agency or using tax software that handles state-specific LLC requirements. Thanks for bringing this up - could save someone a lot of headaches!
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Katherine Hunter
Great thread everyone! I just wanted to add something that helped me when I was in a similar situation with my single-member LLC. Since you mentioned using FreeTaxUSA, one thing to watch out for is making sure you're entering the correct "payer" information from your 1099-B. Even though your brokerage account is in your LLC's name and the 1099-B shows your LLC's EIN, when you report these capital gains on your personal Schedule D, you'll want to make sure the software correctly attributes them to you personally (using your SSN) rather than treating them as separate entity income. I made this mistake initially and it created a mismatch that delayed my refund. The IRS computers expect to see the 1099-B income reported under your SSN since you're the ultimate taxpayer for a disregarded entity, even though the 1099-B itself shows the LLC's EIN. Most tax software handles this automatically, but it's worth double-checking that section to make sure everything matches up correctly. You might see a warning or notice in the software if there's a mismatch - don't ignore those! Also, since this was your first year with capital gains through your LLC, you might want to consider setting aside money for next year's estimated taxes if you plan to continue trading. Capital gains can create a bigger tax bill than you expect, especially if you had significant short-term gains taxed at ordinary income rates.
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Chloe Green
•This is really helpful advice about the EIN/SSN mismatch issue! I actually ran into something similar when I was filing my taxes for my photography LLC last year. My 1099-MISC showed my LLC's EIN, but when I entered it in the tax software, it flagged a potential issue because the income needed to be reported under my personal SSN as the disregarded entity owner. The software automatically converted it, but it definitely threw me for a loop at first. I was worried I was doing something wrong, but it turns out that's exactly how it's supposed to work for disregarded entities. The IRS knows that even though the 1099 shows the LLC's EIN, the actual taxpayer is the individual owner. Your point about estimated taxes is spot on too. I learned that lesson the hard way my first year when I owed way more than expected at filing time. Now I make quarterly payments to avoid the underpayment penalties. It's much easier to spread the tax burden throughout the year than get hit with a huge bill in April!
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Emma Swift
One thing I haven't seen mentioned yet is the importance of keeping your LLC's investment activities clearly documented and separate from any personal trading you might do. Even though both end up on your personal Schedule D for a disregarded entity, you'll want to maintain clear records showing which transactions were made through the LLC versus any personal accounts. This becomes especially important if you have both LLC and personal investment accounts with the same brokerage. I'd recommend using separate brokerages if possible, or at minimum keeping very detailed records that clearly identify the source of each transaction. If you ever get audited, the IRS will want to see that you maintained proper separation between your business and personal activities, even though they're taxed the same way. Also, since you mentioned your accountant disappeared, you might want to consider finding a new CPA before next year's tax season starts. Having professional guidance becomes even more valuable as your LLC grows or if you start generating more complex investment income. The peace of mind is worth the cost, especially when dealing with business entity taxation rules that can change or have nuances you might miss filing on your own.
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Ravi Patel
•This is excellent advice about maintaining separation between LLC and personal investment activities! I learned this lesson when I had to reconstruct my records for an IRS inquiry a few years back. Even though everything ultimately flows to your personal return, the IRS still expects you to be able to clearly demonstrate which activities belonged to which "bucket." I'd also add that if you're planning to continue investing through your LLC, consider setting up a completely separate accounting system or at least dedicated spreadsheets to track the LLC's investment performance separately from any personal trading. This makes it much easier at tax time and provides the documentation trail you'd need if questions ever arise. Your point about finding a new CPA is spot-on too. While DIY tax software has gotten pretty good, having a professional who understands entity taxation can save you from costly mistakes and help with tax planning strategies you might not know about. The cost of a good accountant is usually far less than the potential penalties or missed opportunities from going it alone, especially as your business and investment activities become more complex.
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Danielle Mays
One additional consideration I haven't seen mentioned yet is the potential impact on your LLC's operating agreement if you're doing significant investment activity. While the tax treatment for a disregarded entity is straightforward (everything flows to your personal return), you'll want to make sure your operating agreement properly addresses investment activities if that wasn't originally contemplated when you formed the LLC. Some operating agreements are written very narrowly and might not explicitly allow for investment activities beyond the LLC's primary business purpose. If you plan to continue trading through the LLC, it's worth having an attorney review your operating agreement to ensure it gives you the authority to engage in investment activities and that any liability protections you're seeking are properly structured. Also, depending on the volume and frequency of your trading, you might want to consider whether you need to register for any additional business licenses or comply with securities regulations in your state. Most casual investing doesn't trigger these requirements, but if you're doing substantial trading activity through a business entity, there could be additional compliance considerations beyond just the tax reporting we've been discussing. Better to address these structural issues now while your investment activity is relatively new rather than trying to fix them later if your trading becomes more substantial or complex!
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Amara Eze
•This is a really important point that I hadn't considered! I just reviewed my LLC operating agreement after reading your comment and realized it only mentions my consulting business activities - nothing about investments or securities trading. Since I've been doing some stock trading through the LLC this year, I'm now wondering if I need to amend the operating agreement to explicitly allow investment activities. Do you know if there are any risks to having investment activities that aren't specifically covered in the operating agreement? Could this potentially affect the liability protection that the LLC is supposed to provide? I'm definitely going to look into having an attorney review this, but I'm curious if anyone else has dealt with this situation. It seems like something that could easily be overlooked when you're just focused on getting the tax reporting right.
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