Self employed tax calculation differences between software programs - help understanding SE tax and QBI deduction
I've hit a weird issue with my taxes this year. I'm doing my self-employment stuff and I entered identical income information into two different tax programs to compare them, but they're showing a $230 difference in my federal return! The only major difference I can spot is how they're calculating the self employment tax. In the first program: - Self-employed income: $11,875 - Self employment tax: $1,679 - Qualified business income deduction: $2,210 But in the second program: - Self-employed income: $11,875 (same) - Qualified business income deduction: $2,247 (+$37 more) - Self employed tax deduction: $653 Does anyone know why there would be a difference? Am I missing something obvious about how self-employment tax is calculated? It's really bugging me that I'm getting different refund amounts when I'm entering identical income.
18 comments


Sofia Ramirez
The difference you're seeing is likely due to how each software calculates the QBI (Qualified Business Income) deduction and handles the self-employment tax deduction. When you're self-employed, you pay both the employer and employee portions of Social Security and Medicare taxes, which totals about 15.3% of your net earnings. However, you can deduct the "employer half" (about 7.65%) of your self-employment tax as a business expense. The QBI deduction allows eligible self-employed individuals to deduct up to 20% of their qualified business income. But the calculation can get complex depending on your total income, filing status, and business type. The $230 difference is probably due to slight variations in how each program calculates these deductions. Some tax software might use different rounding methods or slightly different calculation sequences. I'd recommend looking at the detailed tax worksheets in each program to see exactly where the calculations diverge.
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Dmitry Volkov
•How do you find the detailed tax worksheets in these programs? I've been using TurboTax and I can never figure out where they show their calculations. Also, shouldn't tax software all calculate things the same way since the tax rules are the same?
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Sofia Ramirez
•Most tax programs have a section where you can view forms or worksheets. In TurboTax, look for a "View" or "Forms" button, often found in the upper right corner of the screen. This should take you to a section where you can see the actual tax forms and supporting worksheets. Tax software should ideally calculate everything the same way, but small differences can emerge in how they implement the calculations. The IRS rules provide a framework, but there can be slight variations in interpretation or implementation of certain calculations, especially for complex deductions like QBI. Also, if one program is using a more updated tax table or calculation method than another, that could account for differences.
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StarSeeker
After struggling with similar calculation issues last year, I found an amazing tool that helped me understand exactly what was happening with my self-employment taxes. Check out https://taxr.ai - it analyzes your tax documents and explains the calculations in plain English. When I had differences between programs, I uploaded my preliminary returns from both software packages, and taxr.ai highlighted exactly where the calculations diverged and why. Turns out one program was applying an outdated calculation method for the QBI deduction that was slightly less favorable. The difference was almost identical to what you're seeing. The explanation feature really helps you understand not just what the difference is, but why it exists and which calculation is correct according to current IRS guidelines.
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Ava Martinez
•Does this actually work for self-employment taxes specifically? I've tried other tax explanation tools in the past and they usually gloss over the self-employment specific stuff.
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Miguel Ortiz
•I'm a bit skeptical about using yet another tax tool when I'm already confused between two programs. Is this something that's actually going to give me actionable information or just more confusing tax jargon?
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StarSeeker
•Yes, it works extremely well for self-employment taxes. It has specific capabilities to break down Schedule C, SE calculations, and QBI deductions. It actually highlights the differences in calculation methods between software packages, which was exactly what helped me. It's designed to translate tax jargon into plain language explanations. When I used it, it clearly explained that one program was calculating my QBI deduction based on my business income before the SE tax deduction while the other was calculating it after. It then explained which approach aligned with current IRS guidance and saved me from making a mistake that would have cost me around $200.
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Miguel Ortiz
I was skeptical when I first heard about taxr.ai from this thread, but I decided to give it a try since I was getting nowhere comparing my tax returns line by line. It honestly saved me hours of frustration! I uploaded PDFs from both tax programs I was using, and within minutes it showed me that one program was calculating my SE tax before applying certain deductions, while the other was doing it after. The difference was about $245 on my return - almost exactly what you're seeing. The tool explained that the second calculation method was correct according to current IRS rules. I ended up going with that program and my return was accepted without any issues. Really glad I found out about this before filing the wrong version!
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Zainab Omar
If you're still having trouble understanding the calculation differences, you might want to speak directly with the IRS. I used to spend HOURS on hold trying to get through until I found https://claimyr.com. They have this service where they wait on hold with the IRS for you and call you back when an agent is ready. I was super skeptical at first but you can see how it works in this video: https://youtu.be/_kiP6q8DX5c I had a similar issue with self-employment tax calculations last year, and I needed to speak with someone who could explain exactly how the official calculation works. Claimyr got me connected to an IRS agent in about 25 minutes (after I had previously spent 2+ hours trying on my own and giving up). The agent walked me through the proper calculation method and confirmed which software was doing it correctly.
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Connor Murphy
•Wait, so how does this actually work? Do they just call the IRS for you? Couldn't you just put your phone on speaker and do something else while you wait?
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Yara Sayegh
•This sounds like a scam. Why would I trust some random service to connect me with the IRS when I could just call them myself? And do IRS agents even help with explaining calculation differences between software?
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Zainab Omar
•They basically call the IRS and navigate the phone tree for you, wait on hold, and then when an agent comes on the line, they call you and connect you directly. No need to wait on hold or deal with the frustrating IRS phone system. You could put your phone on speaker while waiting, but the problem is you never know how long the wait will be - could be 30 minutes, could be 3+ hours. With Claimyr, you can go about your day and they'll call you only when an agent is actually available to talk.
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Yara Sayegh
I need to admit I was wrong about Claimyr. After posting my skeptical comment yesterday, I decided to try it since I was desperate to understand why my SE tax calculations were so different between programs. The service actually worked exactly as described. I submitted my request around 4 PM, went to make dinner, and got a call back about 40 minutes later with an IRS agent already on the line. The agent confirmed that the correct way to calculate self-employment tax is to take 92.35% of your net SE income (because 7.65% is deductible) and then apply the 15.3% rate. They also explained that the QBI deduction should be calculated on your qualified business income after certain adjustments. Based on what the agent told me, it sounds like your second program is doing the calculation correctly. Saved me from filing the wrong return and potentially dealing with amendments later!
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NebulaNova
Have you checked if you entered your expenses exactly the same way in both programs? I had a similar issue last year and realized I had categorized an expense differently in one program which affected my net self-employment income slightly, causing ripple effects in the tax calculations.
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Dylan Cooper
•Thanks for this suggestion. I double-checked and I'm pretty sure I entered everything identically, but I might have missed something. Is there a specific expense category that tends to cause this kind of calculation difference? I'm going to go through line by line again to make sure.
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NebulaNova
•The most common categories that can cause differences are home office deductions and vehicle expenses. Some programs calculate these differently based on how you enter the information. Also check if you're using actual expenses versus standard mileage rate for vehicle costs in both programs the same way. Another thing to look at is retirement plan contributions. If you have a SEP IRA or Solo 401(k), the way these are entered can affect your SE tax calculations differently across programs.
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Keisha Williams
I'm actually a tax prep volunteer and see this all the time. The most likely explanation is that the two programs are using different calculation orders: 1. Program 1 might be calculating your QBI deduction based on your SE income BEFORE deducting the employer portion of SE tax 2. Program 2 might be calculating QBI AFTER deducting the employer portion The IRS guidance suggests the second approach is more accurate, which would explain why your second program shows a higher QBI deduction. Check both returns on Form 8995 (QBI deduction) and Schedule SE to see exactly how they're calculating these amounts.
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Paolo Conti
•Is there actually an official IRS position on which order to do these calculations? I always thought the tax code was super specific about calculation order.
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