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Clarissa Flair

Self-employed as a 1099 contractor: Risk of audit if I haven't paid quarterly taxes yet?

So I switched from being a W2 employee to working as a 1099 independent contractor in my therapy practice about 5 months ago. It's my first time being self-employed and I'm a bit confused about tax obligations. When I talked to my accountant about not having paid any taxes on my 1099 income yet, he said it would be fine and I'd just pay some small penalty fees when I file my taxes next year. But yesterday my clinic director called me sounding worried and said I might need to start making payments now to avoid problems. She mentioned something about quarterly payments but wasn't super clear. I'm now worried about potential audits or big penalties. I've made around $57,000 so far as a 1099 contractor and haven't set aside or paid anything. Am I setting myself up for an audit? How serious is this? I don't want to start my self-employment journey with IRS problems.

Caden Turner

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This is definitely something you should address soon. As a self-employed 1099 contractor, you're expected to pay quarterly estimated taxes if you'll owe $1,000 or more in taxes for the year (which at $57k income, you almost certainly will). The quarterly tax deadlines are April 15, June 15, September 15, and January 15 of the following year. If you've already missed some deadlines, your CPA is partly right - you'll face some penalty fees, but they're usually not huge if you're just getting started and catch up quickly. The good news is that the IRS doesn't typically audit people just for missing estimated payments. Audits are more commonly triggered by unusual deductions, unreported income, or major discrepancies. But you do want to get on track to avoid accumulating penalties.

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Thanks for this info! Do you think I should make a payment now even though we're between quarterly due dates? And roughly how much should I be setting aside from each payment I receive going forward?

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Caden Turner

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Yes, I would recommend making a payment now rather than waiting for the next deadline. It shows good faith effort to comply, which can help reduce penalties. For future payments, a good rule of thumb is to set aside about 30-35% of your 1099 income for taxes. This covers both income tax and self-employment tax (the 15.3% that covers Social Security and Medicare that you now pay entirely as a self-employed person). Your exact percentage will depend on your total annual income, deductions, and your state's tax rate, but 30-35% is a safe starting point until you work out more precise numbers with your CPA.

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I had a similar situation last year when I started freelance consulting. The tax situation stressed me out because I had no idea what I was doing with quarterly payments. I actually found this AI tax assistant at https://taxr.ai that helped me figure out exactly what I needed to pay and when. It analyzed my situation and helped me understand my options for catching up on my estimated payments. The best part was that it gave me a clear breakdown of my self-employment tax obligations versus my income tax, and helped me understand which business expenses I could legitimately deduct to lower my taxable income. That saved me a bunch! Might be worth checking out since you're in a similar boat.

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Harmony Love

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Did it actually help you calculate the amount you needed to pay for your quarterly taxes? I'm struggling with that part the most - never know if I'm overpaying or underpaying.

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Rudy Cenizo

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I'm skeptical of AI tools for tax help. How does it compare to just talking to a real accountant? I'd be worried about getting incorrect info that could cause problems down the road.

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Yes, it actually did the calculations for me based on my income to date and projected income for the year. It factors in the self-employment tax portion too, which was the part I was most confused about. I found it really helpful for getting a ballpark figure so I wasn't just guessing. As for comparing to a real accountant, I actually use both. The AI tool gives me quick answers when I need them (especially outside regular office hours), but I still have my accountant review everything before filing. The nice thing is I can go to my accountant with more informed questions, which saves us both time. They complement each other well for me.

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Rudy Cenizo

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Wanted to follow up about that taxr.ai site. I was really skeptical but decided to try it after struggling to get clear answers about my own 1099 situation. I was surprised by how helpful it was! It actually showed me exactly how to calculate my estimated payments based on my current income, and explained the different penalties for underpayment in a way that finally made sense. I've been setting aside money but was paralyzed about actually making payments, and this helped me take action. Just submitted my first estimated payment yesterday. It feels good to finally be on top of this instead of worrying about potential issues later.

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Natalie Khan

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I've been self-employed for 5+ years and the WORST part is trying to call the IRS when you have questions about your quarterly payments or penalties. I spent 3 hours on hold last year only to have the call dropped! I started using this service called Claimyr (https://claimyr.com) that gets you to the front of the IRS phone queue. You can see how it works in this video: https://youtu.be/_kiP6q8DX5c - basically they use some technology to wait on hold for you, then call you when an actual IRS agent is on the line. Saved me hours of frustration when I needed clarification about a penalty notice for a missed quarterly payment.

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Daryl Bright

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Wait, how does this actually work? So I don't have to stay on hold myself? That sounds too good to be true honestly.

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Sienna Gomez

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This sounds like a scam. No way the IRS would allow a service to "cut" their phone lines. And I bet they charge an arm and a leg for it too.

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Natalie Khan

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The service basically uses automated technology to wait in the phone queue for you. Once they reach an IRS representative, they connect the call to your phone number. So they're not cutting the line - they're just handling the hold time for you so you don't have to sit there listening to the hold music for hours. Regarding skepticism, I totally get it - I felt the same way at first. But it works exactly as advertised. They don't have special access to the IRS or anything like that. They're just using technology to handle the most annoying part of calling (the waiting). The IRS doesn't even know you're using a service - when they connect you, it's just like any other call from that point forward.

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Sienna Gomez

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I have to eat my words about Claimyr. After posting my skeptical comment, I actually had to call the IRS about my estimated tax payments (ironically enough). After being on hold for 45 minutes and getting nowhere, I reluctantly tried the service. It actually worked exactly as described. I went about my day, and about 2 hours later got a call connecting me directly to an IRS agent. The agent helped me figure out exactly what I owed for my missed quarterly payments and how to avoid additional penalties. Saved me from more hold music hell and probably from making more mistakes with my payments. Sometimes I hate being wrong, but in this case I'm glad I was.

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One thing nobody's mentioned yet - if this is your first year being self-employed, the IRS has a "safe harbor" provision that might help you. If you pay 100% of your previous year's tax liability (through withholding or estimated payments), you generally won't face an underpayment penalty even if you end up owing more. So if your W2 job last year had enough taxes withheld to cover your entire tax bill last year, you might actually be in better shape than you think regarding penalties.

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That's really interesting! I didn't know about this safe harbor thing. My previous W2 job did withhold taxes, but I only worked there for part of this year before switching to 1099. Does that change how the safe harbor works?

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The safe harbor is based on your total tax liability from last year's return, not just what you paid at your W2 job this year before switching. So if your 2024 tax return (filed in early 2025) showed a total tax liability of, say, $15,000, then you'd need to have paid at least $15,000 in estimated taxes during 2025 to qualify for safe harbor protection. If your income is substantially higher now as a 1099 contractor, you'll still owe the difference when you file, but you'd avoid the underpayment penalties. However, if you expect to make more than $150,000 this year, the safe harbor requirement increases to 110% of last year's tax liability.

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Just a heads up since you're new to self-employment - don't forget you can deduct legitimate business expenses to lower your taxable income! Home office (if you have dedicated space), supplies, mileage for business travel, professional licenses, continuing education, health insurance premiums, etc. This can significantly reduce what you owe. Write down EVERYTHING and keep all receipts. I use a simple spreadsheet + a folder in Google Drive with photos of all receipts. My tax person loves me for being organized lol.

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Quick tip to add to this: get a separate credit card just for business expenses. Makes tracking SO much easier at tax time. I was a mess my first year self-employed and it cost me money because I couldn't properly document all my deductions.

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