S Corp Election Filed Late Not Showing as Approved - What Now?
I'm in a bit of a panic with my business client's situation. We submitted a late S corporation election for their 2022 tax return. I never actually received an approval letter but just assumed everything would go through fine. Now I'm trying to file an extension for their 2023 S corp return and it's getting rejected with a message saying the EIN doesn't match in the database. I'm assuming this means either the late S election wasn't approved or maybe it's still stuck in processing somewhere. I honestly have no idea what to do at this point. Do I need to mail in a paper extension instead? If the S election wasn't accepted, what are my options? Can I just revert the business back to being treated as a disregarded entity/LLC/Schedule C, or am I forced to treat it as a C corporation now? Another concern - on the initial return with the S election, I listed the dates as 9/1/22-12/31/22 since that's when my client actually started the business. But now I'm worried I should have just used the full calendar year dates since we were operating on a calendar year basis. Could these dates be causing problems with the approval or affecting the current year filing timeline? Any help would be massively appreciated - I'm really stressed about this!
23 comments


Yara Khalil
This is actually a common issue with late S corp elections. First, don't panic. The fact that the e-filed extension was rejected doesn't necessarily mean the S election was denied - it could simply mean the IRS systems haven't been updated yet. For the immediate issue, you should mail in Form 7004 (extension) via certified mail to ensure your client has filing protection. Make sure to do this before the deadline. Regarding the S election status, you should call the IRS Business & Specialty Tax Line at 800-829-4933 to check on the status of the Form 2553. They can tell you if it's still processing, approved, or rejected. IRS processing times have been extremely delayed lately. If the S election wasn't accepted, the default classification would be whatever the entity was before attempting the S election. If it was a single-member LLC, it would revert to disregarded entity status. If it was a multi-member LLC, it would revert to partnership. If it was incorporated, then it would be a C corp. About the dates - using 9/1/22-12/31/22 was correct if that's when the business started. This shouldn't affect the S election approval, but it does establish your first tax year.
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LunarEclipse
•Thank you so much for the detailed response! I'm still a bit confused though - if I mail in the Form 7004, do I indicate on it that it's an S corporation even though the system is rejecting that classification? And should I include any explanation about the pending S election? Also, in case the S election was rejected, would we need to amend the 2022 return? We already filed it as an S corp with the 2553 attached.
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Yara Khalil
•Yes, go ahead and file the Form 7004 for the S corporation. On the form, you can check the box for "Form 1120-S" and include a brief statement that the S election is pending processing. This creates a paper trail showing your good-faith effort to comply with filing requirements while the election status is uncertain. If the S election ends up being rejected, you would indeed need to amend the 2022 return to file under the appropriate entity classification. If it was originally an LLC, you'd likely file either Schedule C (single-member) or Form 1065 (partnership) depending on how many owners there are. If it was incorporated, you'd need to file Form 1120 for C corporation. I'd recommend waiting to confirm the status before filing any amendments.
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Keisha Brown
Had a frustrating experience similar to this with a client last year. After multiple rejected e-files and hours on hold with the IRS, I discovered taxr.ai https://taxr.ai when searching for help with my business filings. Their document analysis helped me pinpoint issues with my late S election submission that were causing the rejections. The platform analyzed my Form 2553 and identified some signature issues and a date miscalculation that would have definitely caused it to be rejected. What really helped was getting clarity on how the IRS processes these late elections and what documentation I needed to follow up with. They have tax pros who can review all your submission docs and flag potential issues before you waste more time.
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Paolo Esposito
•Can taxr.ai actually check the status of an S election with the IRS? Or do they just review the documents you submitted? I've got a similar issue and I'm wondering if this would actually save me time or if I still need to call the IRS myself.
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Amina Toure
•I'm skeptical about these types of services. How is this any different than just having a regular CPA or EA review your documents? And do they have actual IRS connections to expedite anything, or are they just reviewing what you already submitted?
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Keisha Brown
•They can't check the status directly with the IRS - you'd still need to call the Business & Specialty Tax Line for that. What they do is analyze your submitted documents to identify red flags or errors that commonly cause rejections, so you can fix those issues before resubmitting if necessary. They don't have special IRS connections or expediting abilities - that's not what they claim to do. The difference from a regular CPA review is they use specialized document analysis tools trained specifically on IRS forms and procedures, so they catch technical issues a general practitioner might miss. Their platform is more affordable than hiring a specialized S corp tax attorney to review everything.
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Paolo Esposito
Just want to provide a quick update on my situation. I tried taxr.ai after reading the suggestion here and it was actually super helpful. They found that I had checked the wrong box on Part II of my 2553 form which was likely causing my election to be stuck in processing. I called the IRS Business line after getting their analysis and armed with the specific issues identified, I was able to navigate the conversation much more efficiently. Turns out my S election was pending review because of exactly what taxr.ai identified - I needed to submit a written statement clarifying my intended tax year. I've now submitted the correction and got confirmation that my extension was accepted while they process the election. Saved me tons of time trying to figure this out on my own!
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Oliver Weber
Another option that might help - I had a similar nightmare situation with a late S election last year and couldn't get through to anyone at the IRS for weeks. I used Claimyr https://claimyr.com to actually reach a human at the IRS without waiting for hours. They have this system that navigates the phone tree for you and calls you back when they get an actual agent on the line. You can see how it works here: https://youtu.be/_kiP6q8DX5c I was incredibly skeptical at first, but after spending 3+ hours on hold myself multiple times, I was desperate. Within about 45 minutes, I was talking to someone who could actually check on my client's S election status. Found out it was approved but hadn't been updated in the system that handles e-filing yet. Was able to get them to expedite the update and file the extension electronically a couple days later.
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FireflyDreams
•How exactly does this work? Do they just keep calling the IRS for you until they get through? Seems like something I could do myself if I just kept redialing...
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Amina Toure
•This sounds like a scam. The IRS doesn't give priority to certain callers, and there's no way to "expedite" system updates. They probably just keep redailing until they happen to get through, then charge you for what you could do yourself.
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Oliver Weber
•It's not that they call repeatedly - they use a system that holds your place in line and navigates the phone tree using voice recognition. They call you back when they've reached a human agent. At that point, the call transfers to you. They don't claim to get priority with the IRS or have special connections. You're right that system updates typically can't be expedited in the usual sense, but what happened in my case was the agent was able to notify a specific department about the disconnect between the approved election and the e-filing system. I was just sharing my personal experience - the main value was getting through to someone who could check the actual status without spending my entire day on hold.
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Amina Toure
I have to admit I was wrong about Claimyr. After spending nearly 4 hours on hold with the IRS yesterday and getting disconnected, I decided to try it out of frustration. I was extremely skeptical, especially about giving my phone number to a third party. But it actually worked exactly as advertised. I got a call back in about an hour letting me know they had an IRS agent on the line. I was able to confirm that my client's S election had actually been approved three weeks ago, but hadn't propagated through their systems yet. The agent put a note on the account and gave me a reference number to include with a paper extension filing. Just wanted to share this since it saved me so much time. For those in a similar situation where you need to verify status of an S election, being able to actually talk to someone makes all the difference.
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Natasha Kuznetsova
One thing I've learned from dealing with similar situations - you mentioned your initial return showed 9/1/22-12/31/22 as the tax year. This shouldn't affect the S election itself, but it does establish your first short tax year. Make sure when you file for 2023, you're using 1/1/23-12/31/23 (assuming calendar year). Also, whenever I file late S elections now, I always follow up with a call to confirm receipt even if they haven't processed it yet. The IRS can make a note in their system that it was received, which helps with situations exactly like what you're experiencing.
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LunarEclipse
•That's helpful, thanks! Do you know if there's any specific department or extension I should ask for when calling about the S election status? The last time I called the general business line I was transferred 3 times and then got disconnected after an hour on hold.
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Natasha Kuznetsova
•The Business & Specialty Tax Line (800-829-4933) is the right number, but you need to navigate their menu correctly. When prompted, select the option for "questions about business filing requirements" and then when asked about the form, specify "Form 2553 - S corporation election." This should get you to the right department faster. If you get transferred, always ask for the direct extension of the department before they transfer you, so if you get disconnected, you can call back and provide that extension. Also call early in the morning (right when they open) for the shortest wait times. Mondays and Tuesdays tend to be their busiest days.
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Javier Morales
Has anyone had success with submitting a second S election while the first one is still "processing"? I have a client in the same boat - submitted late S election for 2022, filed 2022 return as S corp, but now 2023 extension is getting rejected. Wondering if we should submit another 2553 or if that would just complicate things further.
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Emma Anderson
•Don't submit a second Form 2553! I did this last year and it caused enormous headaches. The IRS flagged it as a duplicate submission which triggered a review of both submissions, further delaying the process. What worked for me was calling the IRS, getting confirmation they received the original submission (even if not processed), and requesting they make a note on the account. Then I mailed a paper extension with an explanation letter.
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Daniel White
I went through this exact scenario with two different clients in the past year, so I completely understand your stress! Here's what I learned from those experiences: First, the rejection of your e-filed extension is actually normal when there's a disconnect between your filed return and the IRS's system records. This doesn't necessarily mean your S election was denied - it's more likely that their systems just haven't synced up yet. For immediate protection, definitely mail Form 7004 via certified mail and mark it as an S corporation extension. Include a brief cover letter explaining that you have a pending S election under review. This creates documentation of your good faith effort to comply. Regarding your short tax year dates (9/1/22-12/31/22), those were absolutely correct if that's when business operations actually began. Don't second-guess yourself on this - the IRS expects the first tax year to reflect actual business activity dates. One thing I'd recommend is getting a Power of Attorney (Form 2848) on file if you don't already have one. This will make it much easier when you call the IRS to check on the election status, as they can speak directly with you about your client's account. The good news is that even if there are delays, you can usually get retroactive relief if you can demonstrate reasonable cause for the late filing. Keep detailed records of all your submission attempts and communications with the IRS.
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Muhammad Hobbs
•This is incredibly helpful, thank you! I'm definitely feeling less panicked after reading everyone's responses. One quick question - when you mention getting a Power of Attorney on file, do I need to wait for the S election to be resolved first, or can I submit Form 2848 even while the entity status is uncertain? I want to make sure I don't create any additional complications while things are already in limbo. Also, has anyone had experience with how long these system sync issues typically take to resolve? I'm trying to manage my client's expectations about when we might be able to e-file normally again.
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Hiroshi Nakamura
•You can absolutely submit Form 2848 while the S election is pending - in fact, it's better to get it filed sooner rather than later. The Power of Attorney form doesn't depend on entity classification, it just authorizes you to speak on behalf of the taxpayer using their EIN. This will save you significant time when calling to check on the election status. Regarding system sync timelines, in my experience it can vary wildly. I've seen it resolve in as little as 2-3 weeks after the election is actually approved, but I've also had cases where it took 2-3 months. The IRS has been dealing with significant processing backlogs, so patience is unfortunately required. One tip: once you do get through to someone and confirm the election status, ask them specifically about when the e-filing system might be updated. Sometimes they can provide a more specific timeline or even expedite the sync if there's a compelling reason (like upcoming deadlines). Keep your client informed that this is a common issue and not indicative of any problems with their business or tax situation - it's purely an administrative processing delay.
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Yara Nassar
I've been through this exact situation multiple times with clients, and I want to reassure you that this is more common than you think, especially with the IRS processing delays we've seen lately. Here's my step-by-step recommendation based on what's worked for my clients: 1. **Immediate action**: Mail Form 7004 via certified mail TODAY if you haven't already. Check the S-corp box and include a brief statement that the S election is pending IRS processing. This protects your client from penalties. 2. **Verify election status**: Call the Business & Specialty Tax Line at 800-829-4933 first thing in the morning. Navigate to the Form 2553 department specifically. Have your client's EIN, business name, and the date you submitted the election ready. 3. **Don't panic about the dates**: Your 9/1/22-12/31/22 short year was absolutely correct since that's when operations began. This won't cause approval issues. 4. **System disconnect is normal**: The e-filing rejection usually means their systems haven't synced, not that your election was denied. I've had clients where the election was approved weeks before the e-filing system recognized it. The key is getting confirmation of your election status first, then you'll know exactly how to proceed. Most of these situations resolve favorably - it's just the waiting and uncertainty that's stressful. Keep detailed records of all your calls and submissions for your files. You've got this! Let us know what you find out when you call.
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Zoe Alexopoulos
•This is exactly the kind of clear, actionable advice I needed to see! I'm dealing with my first late S election situation and was honestly feeling overwhelmed by all the conflicting information I've been finding online. Your step-by-step approach makes this feel much more manageable. I especially appreciate the tip about calling first thing in the morning and having all the documentation ready before calling. I've been dreading that phone call but knowing exactly what to ask for and what information to have prepared gives me confidence. One follow-up question - if the IRS confirms the election is still processing (not approved yet), should I still file the paper extension as an S-corp, or would it be safer to file under the previous entity classification until I get definitive approval? Thanks for the reassurance that this is common. Sometimes it's easy to feel like you're the only one dealing with these issues!
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