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Aiden O'Connor

IRS made a mistake on my amended return - how do I get this fixed??

So I accidentally contributed too much to my IRA in 2022 (partly my fault, partly my financial advisor's fault for not catching it sooner). We only realized the problem when doing my 2023 taxes. My tax preparer filed an amended 2022 return and I paid the $480 penalty on April 12 electronically. The money was definitely taken from my bank account. Fast forward to early July - I get this random check from the IRS for $487.29. I figured it had to be some kind of scam since I ALWAYS owe taxes (paid like $19,500 for federal this year alone). So I just set the check aside on my desk thinking I'd call to verify if it was legit. Then at the end of July, I get a notice from the IRS saying I owe $680 for unpaid taxes - that's the original $480 plus about $200 in interest and penalties! What the heck?? It's pretty obvious what happened - I paid the $480 with my amended return, the IRS mistakenly refunded it with interest, and now they're claiming I never paid it in the first place. I called the IRS and after waiting forever, finally got an agent who confirmed I was right. She told me NOT to cash the check, but instead to void it and mail it back with a letter explaining what the money was originally for. She said they would adjust everything and it should eliminate the entire bill. I sent it back on August 2 with tracking (thank goodness). Just got another letter on September 21 saying I've "chosen not to pay" and now owe $695. The letter is titled "Notice of Intent to Levy" and I'm totally freaking out. What am I supposed to do now?? I have proof I sent back their erroneous check!

This is unfortunately a common issue when amended returns and payments cross paths. Here's what you need to do: First, don't panic about the Notice of Intent to Levy. This is an automated notice and doesn't mean they're about to seize your assets tomorrow. You have time to resolve this. Call the IRS again, but this time ask for a manager after explaining your situation to the first representative. Explain that you've already returned their erroneous refund per the instructions of a previous IRS agent. Make sure you have your USPS tracking number ready to provide as evidence. Request that they place a hold on your account while this is being sorted out. They can do this for up to 9 weeks, which should give enough time for the returned check to be processed properly. Also, request that they document everything in your account notes. Get the ID number of everyone you speak with and note the date and time of the call. Finally, send a follow-up letter to the address on your notice. Include copies (not originals) of: your USPS tracking receipt showing delivery of the voided check, a copy of the voided check (if you made one before sending it back), bank statements showing the original $480 payment, and a clear explanation of the timeline. Send this certified mail with return receipt.

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Do you think they should also file Form 911 (Taxpayer Advocate Service Application)? This seems like exactly the kind of situation where TAS would step in.

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That's an excellent suggestion. Yes, the Taxpayer Advocate Service can absolutely help in this situation, especially since there's a threat of levy and the normal IRS channels aren't resolving the issue correctly. To file Form 911, you'll want to clearly explain the financial harm that could result from this incorrect levy. Include all the documentation I mentioned previously with your Form 911 submission. The TAS is specifically designed to help taxpayers who are experiencing significant hardship due to IRS actions or inactions, and your case fits that criteria perfectly.

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After dealing with a similar IRS mistake last year, I discovered taxr.ai (https://taxr.ai) and it was honestly life-changing for handling these kinds of IRS notice issues. The tool analyzed my IRS letters and tax transcript to pinpoint exactly what went wrong with my amended return processing. For a situation like yours, it would show precisely how your payment was processed, why the refund was issued incorrectly, and generate a response letter with all the specific IRS codes and regulations that apply to your case. The best part is it explains everything in simple language so you understand what's actually happening with your account. My amended return had been completely misprocessed like yours - they treated my payment as if it was for a different tax year entirely, then hit me with penalties for the original year!

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How does it work with amended returns specifically? My situation is similar but involves business income reported incorrectly on an amendment.

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Seems too good to be true. Does it actually access your IRS account or are you just uploading documents for it to read? I'm always skeptical about giving tax info to random websites.

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For amended returns specifically, it analyzes where the disconnect happened in the IRS processing system. It looks at your original return, the amendment, and the IRS notices to identify which line items or payments the IRS misapplied. Then it creates documentation showing exactly what needs to be corrected. You just upload your documents to the secure system - it doesn't directly access your IRS account. It uses the same security standards as banks, and they don't store your documents after analysis. I was skeptical too, but they don't even ask for your SSN or other identifying info beyond what's already on the documents you upload.

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I was initially skeptical about taxr.ai, but my situation with the IRS was getting desperate. I tried it as a last resort before hiring a tax attorney (which was going to cost me $2,500!). Uploaded my documents and within minutes I understood EXACTLY what happened with my amended return. Turns out the IRS applied my business income adjustment to the wrong tax year and then issued penalties based on their mistake. The system generated a response letter that referenced all the right IRS procedures and codes. The IRS actually responded within 3 weeks (miracle!) and completely reversed the penalties. Still can't believe how well it worked - saved me thousands in potential attorney fees and got the issue resolved way faster than my previous attempts. If you're dealing with amended return issues, definitely worth checking out!

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If you need to speak with an actual IRS agent (which I think you do in this case), I'd recommend using Claimyr (https://claimyr.com). I was in a similar situation where I absolutely needed to talk to a human at the IRS but kept getting disconnected after waiting on hold for hours. Claimyr basically waits on hold with the IRS for you and calls you when they get an agent on the line. You can see how it works in this video: https://youtu.be/_kiP6q8DX5c In your case, you need to speak with someone who can actually see that you returned the check and document everything in real-time. The automated notices will keep coming unless someone manually intervenes in the system. I was skeptical at first but was desperate after 3 weeks of failed attempts to reach someone at the IRS.

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How does this even work? Sounds like some kind of scam to get access to your phone line or something. Has anyone else used this?

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I tried calling the Practitioner Priority Line using my CPA's info and they STILL couldn't help with a similar issue. Highly doubt any service can actually get you through to someone useful at the IRS these days.

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It's actually pretty simple - they use an automated system that navigates the IRS phone tree and waits on hold. When an agent answers, their system connects you to that call. No access to your actual phone line - they just call you when they've got an IRS agent ready to talk. The service just saves you from having to sit on hold yourself. With complex issues like amended returns, speaking directly to an IRS agent is really the only way to get it resolved quickly. Most people don't have hours to waste on hold, especially when the IRS disconnects calls during busy periods.

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Well I never thought I'd be saying this, but Claimyr actually worked. After my skeptical comment I decided to try it since I was completely stuck with my IRS issue. Got a call back in about 90 minutes (after previously spending DAYS trying to get through myself). The IRS agent I spoke with was able to pull up all my records and immediately saw the problem with how my amended return had been processed. They placed a hold on all collection activities and transferred me to the department that handles amended return issues. The agent in that department spent almost 45 minutes reviewing everything and manually corrected the error in their system. Got confirmation by mail last week that the issue is resolved and all penalties were removed. Cannot believe how much time I wasted trying to handle this myself. If you're dealing with an IRS error that needs human intervention, this service is 100% worth it.

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Make sure to document EVERYTHING. I had an almost identical situation last year with an amended return that got completely messed up. Here's what worked for me: 1) Called the IRS main line and explained the situation AGAIN 2) Asked for a "manager" specifically - regular agents often don't have authority to fix these cross-year issues 3) Requested an "account transcript" for both tax years involved 4) Requested a "penalty abatement letter" based on reasonable cause 5) Sent a certified letter with COPIES of all documentation including bank proof of payment The key thing that finally fixed it was getting the account transcript which showed exactly where the money went in their system and how it was incorrectly applied. Don't give up!

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How do you request an account transcript? Is that something I can get online?

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You can request account transcripts online through the IRS website if you create an account at irs.gov/transcripts. It requires some verification steps, but once you're set up, you can download them immediately. If you can't use the online system, you can call the IRS and request them by mail, or use Form 4506-T to request transcripts. The account transcript is incredibly valuable because it shows every transaction with your tax account - payments received, refunds issued, interest calculated, penalties assessed - with specific transaction codes that help identify exactly what happened with your money.

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I'm not sure this helps, but my tax guy said the IRS is MASSIVELY backed up on processing amended returns right now. Like 6-8 months behind. He said they're so overloaded they're making tons of errors like this. Something to do with their antiquated computer systems not being able to properly track amended returns vs. original returns when they're processed out of sequence.

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This! My amended return from last October is still "processing" according to Where's My Amended Return tool. When I finally got through to someone they basically admitted their systems are failing under the workload.

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This is exactly why I always recommend keeping detailed records when dealing with amended returns. Your situation is frustrating but definitely fixable. Since you have the tracking confirmation that the voided check was delivered, you're in a good position. Here's what I'd do immediately: 1) Call the IRS Collections department directly at 1-800-829-7650 (not the general line) and explain this is about a levy notice you received in error. 2) When you get an agent, ask them to look at your account for "transaction code 570" - this should show when they received your returned check back in August. 3) Request an immediate "collection hold" on your account while this gets sorted out. They can place a 60-day hold which prevents any levy action. 4) Ask the agent to send you Form 12153 (Collection Due Process) if they can't resolve it immediately. This gives you formal appeal rights and stops collection activity. Also, definitely consider filing that Form 911 with Taxpayer Advocate Service that others mentioned. Your case has all the elements they look for: IRS error causing financial hardship, multiple failed attempts to resolve through normal channels, and imminent collection action. The key is being persistent and documenting every conversation. Don't let them brush you off - you have proof you followed their own agent's instructions by returning that check.

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