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How to handle excess Roth IRA contribution for 2024 after filing taxes - Return before 4/15/25 deadline

I'm in a bit of a pickle and hoping to get some advice before I meet with my tax person again. I put $7000 into my Roth IRA for 2024. My MAGI was fine in 2023, but I ended up picking up a lot of overtime in 2024 and now my MAGI is over $161,000. I didn't catch this mistake until after filing my 2024 taxes. When I showed my tax preparer the Form 5498 from my account, she just mentioned it was in progress and informational only. We didn't file any additional forms showing my Roth contribution, and I don't think she thought to check my MAGI calculation since this is my first year contributing to a Roth IRA. I just processed a return of excess contributions plus earnings before the 4/15/25 tax deadline. From what I understand, this means I won't get hit with the 6% penalty or the 10% early distribution penalty (I'm under 59.5) since the return of excess essentially voids the contribution and I did it before the deadline. I included a 10% federal and state tax withholding for the earnings (about $250). The rep at my financial institution said this withholding will go directly to the IRS, and the final tax amount can be adjusted later if needed. What I'm trying to figure out: 1. Should I amend my 2024 taxes now once they finish processing? Or wait for the 1099-R that will come in January 2026 for tax year 2025? Some people on tax forums talk about amending earlier and creating a placeholder 1099-R, but I'm not sure how Box 7 would be coded. The withholding will be for 2025, but I read that the earnings should be taxed in the year the contribution was made (2024). 2. Do I need to include Form 5329 with any amendment? If so, do I just fill out Part I to eliminate the 10% penalty using exception code 21? Or is this form unnecessary since I returned the excess? We didn't file any 8606 or 5329 forms with my original return. 3. If I amend before January 2026, should I create a placeholder 1099-R using code PJ or 8J? Should I include the 10% federal/state withholding amounts? The earnings were only about $250, so the tax isn't much, but I'm not sure if this goes on 2024 or 2025 taxes since the withholding happened in March 2025. The online guidance is confusing. It looks like I can amend anytime within 2 years of filing the original return. It might be easier on my tax preparer if I wait for the official 1099-R, especially since I've read that financial institutions sometimes use code 8J in Box 7 instead of PJ. The withholding complicates things further. I'm thinking I should amend and add Form 5329 and 1099-R using Form 1040X, but not sure if that's right.

You've actually done everything right so far! When you return excess Roth IRA contributions before the tax filing deadline (including extensions), you've avoided the 6% excess contribution penalty. Here's what happens next: The earnings portion of what you removed will be taxable for 2024 (the year you made the contribution), but the withholding will be credited to your 2025 taxes (the year it was actually withheld). This creates a bit of a timing mismatch. For your questions: 1. You should amend your 2024 return once you receive the 1099-R (likely in January 2026). While you could create a "dummy" form now, I don't recommend it. The financial institution might code Box 7 differently than you expect, and you want to make sure everything matches their official reporting. 2. You don't need Form 5329 for the excess contribution penalty (Part IV) since you corrected before the deadline. However, you do need to report the early distribution and claim the exception (Part I) using code 21 - Return of excess contributions. This exempts you from the 10% penalty on the earnings. 3. Wait for the official 1099-R. Financial institutions vary in how they code these transactions, and you want to ensure your amendment matches their reporting to avoid IRS notices. The 1099-R will report the distribution as occurring in 2025, but you'll include the taxable earnings on your amended 2024 return. The 10% withholding complicates things slightly, but not terribly. The withholding will be reported on your 2025 return, but the income will be on your amended 2024 return.

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I'm in a similar situation but confused about the withholding part. If the earnings are taxed in 2024 (amended return) but the withholding applies to 2025, does that mean I'd owe the full tax on the earnings in 2024 without benefiting from the withholding until 2025? That seems like double taxation for a year.

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You're not being double-taxed, but the timing is awkward. The earnings are only taxed once - on your 2024 amended return. The withholding is a pre-payment of tax that will be credited on your 2025 return. Think of withholding as money you've already paid to the IRS. Since you withheld in 2025, that pre-payment gets credited to your 2025 tax year, even though the income it was meant to cover is reported in 2024. It's not ideal timing, but that's how the tax law works in this situation.

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Just wanted to share - I used taxr.ai to help me navigate a similar excess contribution issue last year. I uploaded my 5498 and account statements, and they gave me step-by-step instructions for handling the return of excess and exactly which forms needed to be filed. The guidance was super specific to my situation, unlike the general advice I found online that left me confused. I made the mistake of contributing to both a Roth and Traditional IRA in the same year without realizing I was over the combined limit. The site is https://taxr.ai and saved me hours of research plus potentially costly mistakes with the IRS.

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How does taxr.ai actually work? Do they generate the forms for you or just tell you what to do? I'm dealing with an excess contribution situation too but was planning to just have my CPA handle it next year.

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I'm skeptical about these tax tools. How do you know their advice is actually correct? Did you have a tax pro review what they told you to do?

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They analyze your documents and give you personalized instructions based on IRS rules. They don't generate the forms, but they tell you exactly what forms you need, which boxes to fill out, and what codes to use. It's more like having an expert analyze your specific situation rather than just general guidance. For my situation, they pointed out that I needed to use exception code 12 on Form 5329 which my previous tax software didn't catch. They also explained how to report the withholding correctly, which was the most confusing part for me.

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I was totally skeptical about tax analysis tools until I tried taxr.ai for my own excess contribution mess. I used it after getting conflicting advice from two different CPAs about whether I needed to file Form 5329 for my situation. Uploaded my tax docs and got detailed instructions about returning the excess contribution properly before the deadline. They explained that I needed to specify to my brokerage that I wanted a "return of excess contributions" and not just a normal withdrawal. Made a huge difference because the 1099-R coding was completely different! They also clarified exactly how to handle the withholding timing issue (income in one year, withholding credit in another). Ended up saving me from a 6% penalty that would have continued each year until corrected.

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If you're struggling to get hold of the IRS to clarify this situation, I highly recommend using Claimyr. I had a similar excess contribution issue last year but with a Traditional IRA, and I needed to speak with someone at the IRS to confirm how to handle the return of excess contribution. After wasting hours on hold, I used https://claimyr.com and they got me connected to an IRS agent in about 20 minutes. There's a video showing how it works here: https://youtu.be/_kiP6q8DX5c The IRS agent confirmed that I needed to amend my return for the year of the contribution, not the year of the correction, which is exactly what you're trying to figure out. Saved me from making a costly mistake!

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Wait, how does this work? Is this just another hold line or do they somehow get you to the front of the IRS queue? Sounds too good to be true honestly.

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Yeah right... Like anyone can get through to the IRS in 20 minutes. I've spent DAYS trying to get through to them about my amended return. This has to be a scam.

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It's not another hold line - they use an automated system that continuously calls the IRS and navigates the phone tree for you. When they get through to a human, you get a call back to connect with the agent. They're basically doing the tedious waiting for you. It's not about cutting the line or anything magical - just automating the frustrating part of calling repeatedly when lines are busy. I was skeptical too but was desperate after spending three days trying to get through on my own.

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I have to admit I was wrong about Claimyr. After posting that skeptical comment, I decided to try it for my own IRS issue (was fighting an erroneous CP2000 notice for months). Got connected to an IRS agent in about 25 minutes, which was shocking after my previous attempts of waiting 2+ hours only to get disconnected. The agent confirmed I needed to use Form 8275 with my response to properly explain my situation, which none of my previous research had turned up. Would never have resolved this without actually speaking to someone, and I had basically given up hope of getting through. For anyone dealing with complex IRS issues like return of excess contributions where the rules are confusing, being able to actually talk to someone makes all the difference.

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Slightly different take here - I had almost this exact situation last year. My approach was to wait for the official 1099-R in January (which showed code P for principal, J for early distribution exception). My accountant suggested doing the amendment right away in April instead of waiting for the 1099-R. We did it using a "placeholder" 1099-R and assumed code PJ. When the real one came, it matched what we had put, so no issues. The main reason to amend promptly was to get a refund of the 6% excise tax I had originally paid on Form 5329 (I originally didn't realize I could correct it before the deadline). Sounds like you didn't file 5329 originally, so there's less urgency. The earnings were tiny in my case too (like $120), so the tax impact was minimal. I say wait for the 1099-R unless you need to amend for other reasons.

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Thanks for sharing your experience! I didn't file Form 5329 originally (or pay the 6% tax), so there's probably no rush. Did you have withholding on your distribution? That's the part I'm most confused about since the withholding will be for 2025 but the income is for 2024.

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I didn't do any withholding on the distribution, so that does make your situation a bit more complex. Since your withholding happened in 2025, that will be reported on your 2025 return as a tax payment, even though the income from the earnings will be reported on your amended 2024 return. It's a timing mismatch, but that's just how it works with tax years. If the earnings were only about $250, the tax impact is pretty small. At most you might owe around $75 extra on your 2024 amended return (assuming 30% combined federal/state), but then you'll get credit for your withholding on your 2025 return. If you withheld 10% federal and 10% state, that's about $50 total withheld. Your tax pro will know how to handle this when you do the amendment. Just make sure they understand the whole situation regarding the timing of the income vs. withholding.

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Just as a data point, I did a return of excess for 2023 in March 2024 because my income ended up too high. My 1099-R had code 8 (excess contributions) plus code J (distribution exception applies). One weird thing - even though I did the return of excess in March 2024, my financial institution didn't send the 1099-R until January 2025. So definitely expect a lag before getting the official form. If your earnings were only $250, your total tax bill might be $50-80 depending on your bracket. Since that's a relatively small amount, there's probably no harm in waiting for the official 1099-R before amending. If it were thousands in earnings, there might be underpayment penalty concerns.

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Did you have to send in Form 5329 with your amendment? I made an excess contribution to my Roth last year (over the income limit) but I'm not sure which forms I need to file.

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I went through this exact situation two years ago - excess Roth contribution due to unexpected income bump, corrected before the deadline. Here's what I learned: You're absolutely right to wait for the official 1099-R. The timing mismatch with withholding is confusing but not uncommon. The earnings get taxed in 2024 (year of contribution), but your withholding credit applies to 2025 (year withheld). It's awkward but legal. When you do get the 1099-R, it will likely have code P (for the principal/contribution amount) and either J or 8J in Box 7. The "8" indicates excess contribution return, and "J" indicates early distribution exception applies (no 10% penalty). For Form 5329, you'll need Part I to claim the exception for the early distribution penalty (code 21), but you won't need Part IV since you corrected the excess before the deadline. This is important - many people think they don't need 5329 at all, but you do need it to avoid the 10% penalty on earnings. My advice: wait for the 1099-R, then amend with Form 1040X including the 1099-R and Form 5329. The small tax amount ($60-75 probably) isn't worth the hassle of estimating forms now. Your tax preparer will appreciate having the official documents to work with. The withholding timing is just one of those quirky tax situations - you'll essentially get a small refund in 2025 from the "overpayment" of withholding relative to the actual 2025 tax you owe.

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This is really helpful - thank you for breaking down the Form 5329 requirement! I was getting confused reading different sources about whether I needed it at all. So just to confirm: Part I with exception code 21 to avoid the 10% penalty on earnings, but no Part IV since I corrected before the deadline? Also, when you say the withholding creates an "overpayment" in 2025 - does that mean if my regular 2025 tax liability ends up being less than what I had withheld from the distribution, I'd get that difference back as a refund? I'm trying to wrap my head around how this plays out across the two tax years.

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