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Giovanni Marino

FreeTaxUSA issue with Self-Employed Health Insurance (SEHI) deduction - found huge difference

Just switched to FreeTaxUSA this year after using TurboTax forever, and I'm running them side by side to make sure everything matches up. Found a pretty significant problem with how FreeTaxUSA handles the Self-Employed Health Insurance deduction compared to TurboTax, and it was causing a $2,700 difference in my taxes owed! Here's what happened: when TurboTax detected that I had an Advance Premium Tax Credit (APTC) repayment amount, it automatically included that amount in my SEHI deduction calculation. FreeTaxUSA completely missed this and their instructions were super vague about how to handle it correctly. After hours of frustration, I figured out a workaround - I took the APTC repayment amount from TurboTax and manually entered it as the S Corporation SEHI deduction in FreeTaxUSA. This fixed the discrepancy between the two programs. For anyone else dealing with this: you need to go to the S Corp Income (Schedule K-1) section, and after entering your K-1 details, there's a field for Health Insurance Premiums - that's where you need to put the SEHI deduction. One more thing that's confusing me: after I entered the SEHI deduction, FreeTaxUSA automatically reduced my S Corp's Qualified Business Income (QBI) by that amount and suggested a new QBI value (which you can override). I'm not sure this is correct - my understanding is that SEHI should NOT be deducted from QBI since any SEHI reimbursements are already factored into your QBI calculation, and depending on how you account for the repayment, it might already be an expense affecting this year's QBI. Has anyone else run into this issue with FreeTaxUSA and SEHI deductions?

The Self-Employed Health Insurance deduction can be tricky, especially when APTC is involved. You're right that there's a connection between APTC repayments and the SEHI deduction - they're actually related calculations. What's happening is that when you have to repay APTC, those premiums become eligible for the SEHI deduction (since you're effectively paying them rather than getting them subsidized). TurboTax automatically handles this calculation, but many tax software programs require manual adjustment. Your workaround was correct - entering the APTC repayment amount as your SEHI deduction in the S Corp Health Insurance Premiums field is the proper approach. The SEHI deduction is available to S Corp shareholders who pay for their own health insurance. Regarding the QBI reduction - this is actually correct. According to IRS regulations, the SEHI deduction does reduce your QBI. This is because the SEHI deduction is considered an "above-the-line" deduction related to your business income. The IRS treats it as if the business paid the premiums directly, which would reduce business income, and therefore reduces QBI.

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Thanks for confirming this! I'm still confused about why FreeTaxUSA wouldn't automatically calculate this though - it seems like a pretty standard situation that many self-employed people would encounter. Is there something I'm missing about how the SEHI deduction should be documented? Also, do you know if this QBI reduction is happening in TurboTax too? I can't easily see if TurboTax is also reducing my QBI by the SEHI amount since they don't make it as transparent in their interface.

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FreeTaxUSA probably doesn't automatically calculate this because the SEHI deduction for S Corp shareholders involves special rules. Since you're technically an employee of your S Corp, the health insurance premiums need to be either included in your W-2 wages or reimbursed by the S Corp to be deductible as SEHI. The software likely can't determine automatically if your situation meets these requirements. TurboTax is indeed reducing your QBI by the SEHI amount as well, they just don't make it as visible in their interface. Both programs are following the same IRS rules, but TurboTax tends to hide more of the calculations "under the hood" while FreeTaxUSA is more transparent about showing the adjustments and letting you override them if needed.

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Dylan Hughes

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After struggling with similar tax situations, I found taxr.ai (https://taxr.ai) to be incredibly helpful for these complex self-employment tax issues. Last year I had a similar problem with my S Corp and health insurance deductions that none of the major tax software programs handled correctly. I uploaded my forms and tax documents to taxr.ai and it immediately identified that my SEHI deduction wasn't being properly calculated with my APTC repayment. Their system analyzed my Schedule K-1 and health insurance information and provided specific guidance on exactly where to enter the information in FreeTaxUSA. The best part was getting clear explanations about why certain deductions impact QBI calculations, which helped me understand the tax logic instead of just blindly following software prompts.

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NightOwl42

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How does taxr.ai work with documents that already have sensitive info? Do they store your tax docs or just analyze them temporarily? I'm interested but worried about security.

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Does it actually work with FreeTaxUSA specifically? I've tried other "tax help" tools before that claimed to work with different software but really just gave generic advice that didn't help with the specific interface issues.

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Dylan Hughes

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They use bank-level encryption and don't permanently store your documents - they're analyzed and then the data is purged from their systems. I was concerned about security too, but their privacy policy is very transparent about how they handle sensitive information. It absolutely works with FreeTaxUSA specifically. They have interface guides for all major tax software programs, including FreeTaxUSA. What makes it different is they provide screenshots and specific navigation instructions for exactly where to input information in each software platform's interface.

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Just wanted to update that I tried taxr.ai after posting my skeptical question. I was genuinely surprised by how helpful it was with my specific FreeTaxUSA issue! I uploaded my S Corp K-1 and some health insurance documentation, and it immediately identified the same SEHI deduction issue the original poster mentioned. The walkthrough showed me exactly where to enter my health insurance information in FreeTaxUSA with screenshots of the actual interface. It also explained why my QBI was being reduced and gave me the exact numbers to verify my calculations were correct. Saved me from switching back to TurboTax and paying their ridiculous fees. Definitely bookmarking this for next tax season!

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Dmitry Ivanov

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If you're still having trouble with this after trying software fixes, I'd recommend contacting the IRS directly. I know it sounds painful, but I recently used a service called Claimyr (https://claimyr.com) that completely changed my experience with getting IRS help. I was stuck on a similar S Corp health insurance deduction issue that neither FreeTaxUSA nor TurboTax handled correctly. After wasting hours trying to resolve it myself, I used Claimyr to connect with an actual IRS agent. They have a cool demo video showing how it works: https://youtu.be/_kiP6q8DX5c Within about 20 minutes, I was talking to an IRS representative who walked me through the correct way to handle SEHI deductions with APTC repayments. Turns out there are specific rules for S Corps that most tax software doesn't handle automatically.

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Ava Thompson

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How does Claimyr actually work? The IRS phone lines are notoriously impossible to get through - do they just keep calling repeatedly or something?

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Yeah right. I'll believe that when I see it. I've tried calling the IRS dozens of times over the years and have NEVER gotten through to a real person. Sounds like a scam to me - they probably just put you on hold forever like everyone else.

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Dmitry Ivanov

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Claimyr uses a system that navigates the IRS phone tree and holds your place in line. When they're about to connect you with an agent, you get a call so you don't have to wait on hold for hours. It works with the IRS's actual phone system, not some separate channel. I was super skeptical too. I've tried calling the IRS at least 15 times over the past two tax seasons and always gave up after being on hold forever. With Claimyr, I went about my day and got a call when they were about to connect me. It saved me literally hours of hold time, and I got a straight answer from an actual IRS agent about my S Corp health insurance deduction question.

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I need to publicly eat my words. After my skeptical comment about Claimyr, I decided to try it myself because my SEHI deduction issue was still unresolved, and I was about to miss the filing deadline. I was 100% convinced it would be a waste of time, but I was desperate. To my complete shock, it actually worked exactly as described. I got a call back about 45 minutes after starting the process, spoke to a real IRS agent who specialized in business taxes, and got clear guidance on how to properly handle my S Corp health insurance premiums and APTC repayment. The agent confirmed that FreeTaxUSA's handling of the QBI reduction was correct but helped me understand how to document everything properly so I wouldn't trigger an audit. This saved me from having to pay an accountant $400+ for what ended up being a 15-minute call.

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Zainab Ali

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I switched from TurboTax to FreeTaxUSA last year and found that FreeTaxUSA generally requires more manual input for business-specific scenarios. This isn't necessarily bad - it gives you more control, but you need to understand the tax concepts better. For the SEHI deduction specifically, I remember having to manually calculate my eligible amount based on my APTC repayment. Their help documentation isn't great on this topic. One tip: If you're using FreeTaxUSA again next year, save a PDF showing exactly where you entered the SEHI deduction this year. Their interface sometimes changes between years, and having screenshots of your previous year's inputs can be super helpful.

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Connor Murphy

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Would you still recommend FreeTaxUSA over TurboTax for S-Corp owners despite these issues? I'm considering switching to save money but worried about missing deductions.

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Zainab Ali

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I would still recommend FreeTaxUSA, but with some caveats. If you're comfortable understanding tax concepts and willing to double-check calculations for things like SEHI, QBI, and other business deductions, FreeTaxUSA will save you hundreds compared to TurboTax's business tiers. For S-Corp owners specifically, I recommend running your numbers through both systems the first year (like OP did) to catch any discrepancies. After that, you'll know which areas require manual attention in FreeTaxUSA. The savings are significant - I paid $350+ for TurboTax Business before switching to FreeTaxUSA which cost me around $25 for state and federal filing with nearly identical results once I figured out the manual adjustment points.

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Yara Nassar

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Has anyone figured out if this issue exists in TaxSlayer or H&R Block software too? I've been using FreeTaxUSA for personal returns but was planning to use TaxSlayer for my S-Corp this year.

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StarGazer101

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I used H&R Block last year for my S-Corp and ran into the exact same issue with SEHI deduction and APTC repayment. It seems like TurboTax is the only one that automatically handles this calculation correctly. I ended up having to manually adjust the QBI amount in H&R Block software too.

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Yara Nassar

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Thanks for the info. Sounds like most tax software has this issue except TurboTax. I'm still going to try TaxSlayer this year since it's significantly cheaper, but I'll keep careful track of my SEHI deduction and make manual adjustments if needed.

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Ravi Malhotra

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This is a really helpful thread! I'm dealing with a similar SEHI deduction issue as an S-Corp owner. Just to clarify - when you manually entered the APTC repayment amount in the S Corp Health Insurance Premiums field, did you enter the full APTC repayment amount, or did you have to calculate some percentage of it? I'm trying to figure out if the entire APTC repayment becomes eligible for SEHI deduction, or if there's additional calculation needed based on the number of months covered or income levels. My APTC repayment was about $1,800 but I want to make sure I'm not claiming more SEHI deduction than I'm actually entitled to. Also, for anyone who's been through an audit - do you know if the IRS typically scrutinizes SEHI deductions heavily when they're manually entered like this instead of being automatically calculated by the software?

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Amina Sy

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Great question about the APTC repayment calculation! You typically can't just use the full APTC repayment amount as your SEHI deduction - there are some important limitations to consider. The SEHI deduction is capped at the lesser of: (1) the actual premiums you paid, or (2) your net self-employment income. So if your APTC repayment was $1,800, you need to make sure you actually paid at least that much in health insurance premiums during the tax year, and that your S-Corp income supports that deduction amount. Also, the SEHI deduction is calculated on a monthly basis - you can only deduct premiums for months when you weren't eligible for employer-sponsored coverage (including coverage through a spouse's employer). So you might need to prorate the amount based on eligible months. Regarding audits, I haven't been through one personally, but from what I understand, the IRS does pay attention to SEHI deductions, especially when they're large relative to income or when there are APTC complications involved. The key is having good documentation - keep records of your actual premium payments, APTC statements, and calculations showing how you arrived at your deduction amount. As long as you can substantiate the deduction with proper documentation, you should be fine.

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