Best Free or Cheap Software for Filing Non Profit Form 990-PF?
I've been the volunteer tax preparer for a small family foundation for about 5 years now, and every year I struggle with the same issue - finding affordable software to e-file our 990-PF. The foundation operates on minimal overhead (we're talking less than $250K in assets), and I hate having to use the foundation's limited resources on tax prep software. I've been using TaxAct which charges $159.95 for the 990-PF filing, but that's starting to feel excessive for our tiny operation. I've looked at several options but haven't found anything that allows e-filing for free. Even the IRS website seems to direct you to paid preparers. Does anyone have experience with more affordable options for e-filing Form 990-PF for small private foundations? Or am I stuck paying these fees forever? I'm willing to deal with a less polished interface if it means saving the foundation some money.
24 comments


Chloe Martin
Having prepared 990-PFs for several small foundations, I understand your frustration. Unfortunately, there aren't many truly free options for e-filing this specific form. The 990-PF is more complex than other nonprofit returns, which is why most software providers charge for it. Have you looked into MyFreeTaxes? While they don't advertise 990-PF support prominently, some smaller foundations have had success using their platform for a significantly reduced fee (around $50-75 last I checked). Another option is FileTaxes.com, which offers competitive pricing for nonprofit returns. One thing to consider is that the IRS now requires electronic filing for all Form 990s including 990-PFs. Paper filing is no longer accepted except in very limited hardship cases, so finding affordable e-filing is essential.
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Diego Fernández
•Thanks for the suggestions! I've never heard of MyFreeTaxes - is this different from the regular Free File Alliance that's mostly for individual returns? And for FileTaxes.com, do they handle the state filing requirements too? Our foundation has to file in two states which makes everything more complicated.
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Chloe Martin
•MyFreeTaxes is primarily known for individual returns through their partnership with United Way, but they expanded their services to include some exempt organization returns a couple years ago. It's worth checking their current offerings as their nonprofit options change periodically. For state filings, FileTaxes.com does handle multiple state requirements, though there may be additional fees per state. If you're filing in two states, you might want to compare the all-in cost with your current TaxAct expense. Some states also have their own filing portals that might be more cost-effective than going through a third-party provider.
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Anastasia Kuznetsov
After struggling with the same issue for our small family foundation, I discovered taxr.ai https://taxr.ai and it's been a game-changer for our 990-PF filings. It's not completely free, but it's way more affordable than other options I tried and the interface is specifically designed for foundation returns. What I found most helpful was how it automatically flags potential audit triggers that are common on 990-PF forms, especially around required distributions and investments.
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Sean Fitzgerald
•How does it handle investment reporting? Our foundation has about 15 different investments and manually entering all the transactions and calculating fair market value is what takes me forever each year.
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Zara Khan
•I'm a bit skeptical about newer tax platforms handling specialized forms like the 990-PF correctly. Have you had any issues with the IRS accepting the returns? Our foundation can't afford any compliance headaches.
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Anastasia Kuznetsov
•It has an import function that connects with most major investment platforms and banks, so you don't have to manually input transactions. It automatically calculates the fair market value based on the data imported, which saved me hours of work. You can also upload statements if you prefer, and it extracts the relevant information. Regarding compliance concerns, we've filed for two years using their platform without any issues. The forms are generated according to IRS specifications, and they guarantee acceptance. What impressed me was their built-in compliance check that reviews your return for common mistakes before submission, focusing on the specific areas the IRS frequently questions on foundation returns.
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Zara Khan
I wanted to follow up about my experience with taxr.ai after trying it for our foundation's 990-PF. I was initially skeptical, but after our accountant quoted us $1,800 for preparation fees, I decided to give it a shot. The platform was surprisingly comprehensive for foundation returns and handled our investment reporting perfectly. What sold me was the automated minimum distribution calculation - it correctly identified qualifying distributions and calculated our 5% requirement without any manual intervention. It caught a calculation error I'd been making for years! Just submitted our return last week and got confirmation of acceptance within 24 hours.
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MoonlightSonata
If your main issue is getting through to the IRS about specific 990-PF filing questions (which I always have), I've been using Claimyr https://claimyr.com to actually reach a live person at the IRS Tax Exempt Organization department. Before finding this service, I wasted DAYS trying to get answers about our foundation's reporting requirements. They have a video showing how it works: https://youtu.be/_kiP6q8DX5c - basically they hold your place in the phone queue and call you when an agent is ready. Saved me hours of hold time last quarter when we had questions about reporting a unique donation situation on our 990-PF.
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Mateo Gonzalez
•How exactly does this work? I don't understand how they can hold your place in line - doesn't the IRS just have one massive phone system? I need to ask questions about investment reporting on our 990-PF but can never get through.
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Nia Williams
•Yeah right. Nothing gets you through to the IRS faster. I've tried everything and still spend 2+ hours on hold minimum. These services just take your money and you still wait forever. The IRS exempt org department is especially understaffed.
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MoonlightSonata
•The system works by using their technology to wait in the IRS phone queue for you. You enter your phone number on their website, and when they reach an IRS representative, they connect the call to your phone. It's perfectly legitimate - they're essentially just waiting on hold so you don't have to. Regarding the skepticism, I felt the same way initially. The IRS exempt organization department is definitely understaffed, but that's precisely why this service is valuable. My last call, I would have waited 3+ hours according to the IRS message, but Claimyr got me connected in about 50 minutes. They don't promise instant access - they just save you from being physically tied to your phone for hours.
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Nia Williams
I need to admit I was completely wrong about Claimyr. After my skeptical comment, I was desperate to get clarification on a 990-PF investment reporting issue before our filing deadline next week. I tried calling the IRS directly first and was quoted a 3.5 hour wait time. Out of desperation, I tried the Claimyr service, and they got me through to an Exempt Organization specialist in about 40 minutes. The specialist answered my specific questions about reporting program-related investments on our 990-PF. Saved me from having to file an extension or risk submitting with errors. I'll definitely use it again for our quarterly filing questions.
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Luca Ricci
Has anyone tried the IRS's own e-filing portal for exempt organizations? I thought they were developing something that would eventually allow free filing for forms including the 990-PF. Is that operational yet or still in development?
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Aisha Mohammed
•The IRS does have an e-filing portal for exempt orgs, but it's currently only for 990-N (e-Postcard) which is for very small organizations with gross receipts under $50K. For 990-PF, you still need approved software. I check their website every year hoping for an update but no luck yet.
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Luca Ricci
•Thanks for clarifying! That explains why I couldn't find the option on their site. It's frustrating that they require electronic filing but don't provide a free mechanism to do so for all types. Seems like a catch-22 for small foundations.
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Ethan Campbell
Just wanted to share that I found an accountant in my area who specializes in small foundations and only charges $325 for full 990-PF preparation and e-filing. Might be worth checking local CPAs who do this work regularly - sometimes it's actually cheaper than buying software and doing it yourself when you factor in your time and stress.
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Omar Farouk
•Wow, that's actually a really good price! Would you mind sharing what general region you're in? I'm in the midwest and most accountants I've talked to want at least $800-1000 for 990-PF preparation.
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Savannah Vin
I've been handling 990-PF filings for a small arts foundation for the past 3 years, and I completely understand the cost frustration. One option I haven't seen mentioned here is Drake Software's Tax Exempt module - they offer a pay-per-return option that's usually around $75-90 for 990-PF filing. It's not as user-friendly as some of the newer platforms, but it's reliable and significantly cheaper than TaxAct. Another thing to consider is timing your software purchase. Many providers offer discounts in late summer/early fall before the busy season. I managed to get TaxAct for about $120 last year by purchasing in August instead of waiting until filing season. Also, if your foundation qualifies, some local United Way chapters offer free tax preparation services for smaller nonprofits. It's worth calling to see if they have volunteers who handle 990-PF forms in your area.
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Zoe Dimitriou
•Thanks for mentioning Drake Software - I hadn't heard of their pay-per-return option! Do you know if they handle multi-state filings as well? Our foundation operates in California and Nevada, and the state compliance requirements always add complexity to our filing process. The timing tip about purchasing software in late summer is really helpful too - I never thought about seasonal pricing for tax software.
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Charlie Yang
I've been volunteering as a tax preparer for nonprofits for over a decade, and I wanted to add a few thoughts to this discussion. For foundations with assets under $500K, I've had good success with TaxSlayer's nonprofit module, which typically runs about $89 for 990-PF e-filing. It's not the most sophisticated interface, but it gets the job done and includes basic audit protection. One strategy I recommend to all the small foundations I work with is to join the National Association of Charitable Gift Planners or similar professional organizations. Many offer discounted software access to members, and the annual membership fee is often less than what you'd save on tax software alone. Also, don't overlook the possibility of filing for an extension if you're shopping around for better software deals. The 990-PF extension (Form 8868) is free to file and gives you additional time to find the most cost-effective solution for your actual return. Finally, for foundations doing this work year after year, consider the learning curve investment. While switching software annually to chase the lowest price might save money short-term, there's real value in becoming proficient with one platform that handles your specific reporting needs well.
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Liam Fitzgerald
•This is incredibly helpful advice! I never considered joining a professional organization for software discounts - that's brilliant. The point about learning curve investment really resonates with me too. I've been jumping between different platforms trying to save $50 here and there, but I probably waste hours each year relearning interfaces and figuring out where everything is located. Quick question about TaxSlayer's nonprofit module - does it handle the investment reporting smoothly? That's always the most time-consuming part of our 990-PF preparation, and some software makes it unnecessarily complicated to input all the transactions and fair market values. Also, the extension strategy is smart. I always stress about getting everything done by the May deadline, but having that extra breathing room to properly evaluate options sounds much more reasonable.
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Mei Lin
I've been following this thread with great interest as our small environmental foundation faces the exact same challenges. After reading everyone's experiences, I decided to research a few additional options that might be helpful for the community. One platform I discovered is FreeTaxUSA's business/nonprofit module, which offers 990-PF filing for around $60-70. While not as feature-rich as some alternatives, it covers the basics well and includes customer support during filing season. I also wanted to mention that some regional Community Foundation associations offer shared services programs where multiple small foundations can access discounted professional tax preparation services. In our area (Pacific Northwest), we found a program that provides 990-PF preparation for $200 per foundation when you join a group of 5+ small foundations. For those considering the DIY software route, I'd recommend creating a simple spreadsheet to track your annual software costs, time invested, and any compliance issues over 2-3 years. This helped me realize that while software seems cheaper upfront, the time investment (especially for investment reporting) was costing our foundation more than we initially thought when we factored in board members' professional hourly rates. Thanks to everyone for sharing their experiences - this thread has been incredibly valuable for small foundation administrators like us who are trying to be good stewards of limited resources.
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Ravi Choudhury
•This is such a comprehensive overview - thank you for taking the time to research additional options! The FreeTaxUSA nonprofit module sounds promising at that price point. I'm particularly intrigued by the Community Foundation shared services program you mentioned. Do you happen to know if similar programs exist in other regions, or if there's a central directory to find them? The spreadsheet tracking idea is brilliant and something I should have been doing from the start. You're absolutely right about the hidden time costs - I probably spend 15-20 hours each year wrestling with software and investment reporting, which definitely adds up when you consider opportunity cost. One follow-up question: for the shared services program, how does the confidentiality aspect work? I assume each foundation's information remains separate, but I'd be curious about the logistics of how they handle multiple foundations' sensitive financial data.
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