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Layla Mendes

Why are my Federal tax withholdings so high on my commission check?

Just got my first paycheck of the year and I'm shocked at how much went to federal taxes - $1249 taken out of a gross $6523.88! This was a commission check (I get paid regular salary twice a month and commissions once monthly). No 401k contributions were taken out of this check. Even if they calculated it assuming this is what I make every paycheck, I should've only been paying around $1175 based on my calculations. I have 0 withholding allowances selected on my W-4. Can anyone help explain why the feds are taking so much? Thanks in advance for any insights!

Commission checks are often withheld at a higher rate than regular paychecks because payroll systems typically treat them as "supplemental wages" which have a flat 22% federal withholding rate (or higher for larger amounts). Your payroll system might be treating this commission check as if it's in addition to your regular income, essentially putting you in a higher tax bracket for this specific check. The good news is that when you file your tax return, any overwithholding will come back to you as a refund. The withholding is just an estimate - your actual tax liability is calculated when you file.

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Thanks for explaining! So does this mean I should expect all my commission checks to have this higher withholding rate? Is there any way to adjust this so I'm not giving the government an interest-free loan all year?

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Yes, you'll likely see this higher withholding on all commission checks throughout the year. You have a couple options to adjust this: you could update your W-4 with your employer to include an additional amount on line 4(c) that would REDUCE withholding from your regular paychecks to offset the higher commission withholding. Alternatively, you could fill out a new W-4 with additional deductions or dependents to lower your overall withholding rate. Just be careful not to underwithhold and end up owing a penalty. The IRS has a good withholding calculator on their website that can help you determine the right amount.

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I went through the same thing with my sales commissions last year and it was driving me crazy trying to figure out why so much was being withheld! I tried talking to our payroll department but they were no help. I finally used https://taxr.ai to analyze my pay stubs and tax situation. It showed me exactly why my withholdings were so high (supplemental wage rules) and helped me adjust my W-4 to balance things out between my regular checks and commission checks.

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Does it actually work with commission-based income? I'm in the same boat and our company switched payroll systems this year which made everything worse.

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I'm hesitant about using online tax tools after getting burned by one last year. How does this compare to just using the IRS withholding calculator?

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It's specifically designed to handle complex situations like commission-based income. The tool analyzes your specific pay structure and shows you exactly why certain deductions are happening the way they are. It was super helpful for me because my commissions vary a lot month to month. As for comparing to the IRS calculator, the main difference is that taxr.ai explains WHY things are happening rather than just giving you a number. It showed me the exact rules being applied to my commissions and explained the whole supplemental wage thing in plain English. Plus it gave me specific instructions for my W-4 based on my complete income picture.

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Update: I tried out taxr.ai after seeing the recommendation here, and wow - it was eye-opening! I uploaded my last few pay stubs and it immediately identified that my commissions were being withheld at nearly 35% because our new payroll system was treating them as bonuses. The tool showed me exactly how to fill out my W-4 to account for both my salary and variable commission income. Already submitted the new form to HR and they said it'll take effect next paycheck. Thanks for the suggestion!

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If you need clarification directly from the IRS on how your commissions should be taxed, good luck getting through to them. I spent THREE DAYS trying to get someone on the phone about a similar issue. Then I found https://claimyr.com and their service got me connected to an IRS agent in about 20 minutes. You can see how it works here: https://youtu.be/_kiP6q8DX5c. The agent confirmed that my employer was withholding correctly but explained how I could adjust my W-4 to get closer to my actual tax liability.

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How does this even work? Seems too good to be true. The IRS phone system is basically designed to prevent you from talking to humans.

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This sounds like a scam. You're telling me you pay someone else to call the IRS for you? Why would that work any better than calling yourself?

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The service uses a priority callback system that navigates the IRS phone tree and secures a spot in line for you. When they're about to connect with an agent, you get a call and they transfer you. You're talking directly to the IRS - the service just handles the waiting part. They have access to phone systems that can stay on hold indefinitely and navigate the complicated IRS phone menus. It's like having someone stand in line at the DMV for you - when they're near the front, they call you to take their place. Completely legitimate and saved me hours of frustration.

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I've got to eat my words. After posting my skeptical comment, I decided to try Claimyr because I've been trying to reach the IRS about an issue with my commissions and self-employment taxes for WEEKS. I was connected to an agent in 35 minutes while I was making dinner. The agent confirmed that supplemental wages like commissions are typically withheld at a flat 22% rate, but explained I could submit a modified W-4 with additional withholding to balance things out over the year. Worth every penny not to waste another day on hold!

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One thing to check - are they taking out Social Security tax on the full amount? There's a cap on Social Security tax (around $168,600 for 2025), so if you're going to be over that for the year, you might want to factor that in when adjusting your withholding later in the year.

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I didn't even think about the Social Security cap. My total comp should be around $140k this year, so I won't hit it, but that's good to know for future planning. Does Medicare also have a cap?

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Medicare doesn't have a cap like Social Security does - you pay the 1.45% Medicare tax on all your earned income. However, there is an additional 0.9% Medicare surtax on earned income above $200,000 for single filers or $250,000 for married filing jointly. Just keep an eye on your year-to-date totals on your pay stubs. If you end up having a really good commission year and approach that $168,600 threshold for Social Security, you might want to readjust your withholding again since you'll suddenly have 6.2% more in your checks after you hit the cap.

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Are you sure you filled out your W-4 correctly? The "0 withholding" terminology is from the old W-4 form. The new form doesn't use allowances anymore. If you're using outdated terminology, you might be using an outdated form, which could explain the confusion.

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Drake

This! The W-4 was completely redesigned in 2020. There's no such thing as "0 withholding" or "claiming 0" anymore. You need to fill out the new form which asks completely different questions.

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Great point about the W-4 form! I think I might still be using the old terminology. I filled out my W-4 when I started this job in 2023 and checked the box for "Single or Married filing separately" with no additional amounts entered anywhere else. Should I be filling out a new W-4 with the current form to make sure my withholdings are calculated correctly? And would that help with the commission withholding issue, or is the 22% supplemental wage rate going to apply regardless of how I fill out the form?

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Yes, definitely fill out a new W-4 with the current form! The 22% supplemental wage rate will likely still apply to your commission checks regardless of your W-4 settings - that's a separate calculation your payroll system does. However, updating your W-4 can help you adjust the withholding on your regular salary checks to better account for the overwithholding on commissions. The new W-4 form is much more precise and asks about your complete tax situation rather than just allowances. You can use it to reduce withholding on your regular paychecks to offset the higher commission withholding, or add extra withholding if needed. Since you're getting both salary and commissions, the new form will give you much better control over your overall tax situation throughout the year.

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This is exactly what happened to me when I switched to a commission-based role! The key thing to understand is that your employer's payroll system is required to withhold at the supplemental wage rate for commissions, which is currently 22% for amounts up to $1 million. This happens regardless of your W-4 settings. However, you can definitely optimize your overall withholding strategy. I'd recommend using the IRS withholding calculator (or one of the tools others mentioned) to figure out your total expected tax liability for the year, then adjust your regular salary W-4 to account for the overwithholding on commissions. You might be able to reduce withholding on your twice-monthly salary checks to balance things out. Also, make sure you're using the current W-4 form from 2020 or later - the old allowances system doesn't exist anymore. The good news is that any overwithholding will come back to you as a refund, but I understand wanting to keep more of your money throughout the year instead of giving the government an interest-free loan!

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This is really helpful - thank you for breaking down the supplemental wage rate so clearly! I'm definitely going to update my W-4 to the current form since it sounds like I might still be using the old system. Quick question: when you reduced withholding on your regular salary checks to offset the commission overwithholding, did you have to recalculate this each time your commission amounts changed, or were you able to find a stable setting that worked throughout the year? I'm worried about accidentally underwitholding if my commission income varies significantly month to month.

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