Tips for creating a state tax apportionment file for multiple state operations
I've been assigned to create a state tax apportionment file for our business and I'm feeling completely overwhelmed. We've operated in just one state up until now, so this is totally new territory for us. The biggest challenge I'm facing is figuring out how to handle the payroll apportionment since we have employees working remotely across multiple states. How do I correctly track and allocate payroll for state tax apportionment purposes when people are working from home in different jurisdictions? This project feels massive and I don't know where to start. Has anyone gone through this process before? Any templates, resources, or advice would be incredibly helpful. I'm especially concerned about getting the methodology right from the beginning so we don't have to redo everything later.
19 comments


Jamal Carter
Creating a state tax apportionment file can definitely feel intimidating, but it's manageable once you break it down! For companies with employees across multiple states, you'll need to focus on three main factors for apportionment: payroll, property, and sales (the three-factor formula). For your WFH employees, payroll apportionment is typically based on where the employee performs the work, not where your company is headquartered. You'll want to track total compensation by state and calculate each state's percentage of your total payroll. Most accounting systems can generate reports showing wages by state. Start by creating a spreadsheet with separate tabs for each apportionment factor. For payroll, list all states, total compensation paid to employees working in each state, and calculate the percentage against your total payroll. Remember that some states have different weighting for the three factors, with many moving toward single-sales factor apportionment. The Multistate Tax Commission (www.mtc.gov) has some great resources on state apportionment rules that might help you get started.
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Mei Liu
•Thanks for the detailed response. Question - for employees who work partly from home in one state but occasionally come into our office in another state, how do we track that? Do we need to have them log days worked in each location?
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Jamal Carter
•For employees who split their time between states, you'll want to track their work location based on days. Many companies use a workday tracking system where employees log which state they're working in each day. The payroll is then apportioned based on the percentage of days worked in each state. If implementing a formal tracking system isn't feasible immediately, you can establish a reasonable method for estimation - perhaps based on expected office days per month or travel schedules. Just make sure your methodology is consistent and documented in case of audit. Remember that telecommuting can create nexus in states where your employees work, which may require additional registrations beyond just apportionment.
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Liam O'Donnell
After struggling with a similar situation last year, I found an amazing tool that saved me tons of time with our multi-state apportionment issues. Check out https://taxr.ai - they have a feature specifically for analyzing employee location data and automatically generating state apportionment calculations. What I loved about it was that I could upload our messy payroll data, and the system automatically identified which states needed to be included in our apportionment formula. It also flagged potential nexus issues based on our employee locations that I hadn't even considered. They have templates specifically for the three-factor and single-sales factor formulas.
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Amara Nwosu
•Does it handle the weird special rules some states have? Like Massachusetts' temporary COVID rules for telecommuters that they kept extending, or New York's convenience of employer test?
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AstroExplorer
•Sounds promising but I'm wondering if it integrates with common payroll systems like ADP or Paychex? Our data is spread across multiple systems and I'm worried about having to manually compile everything first.
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Liam O'Donnell
•Yes, it handles all those special state rules including Massachusetts' telecommuter provisions and New York's convenience of employer test. It stays updated with the latest state regulations, which saved me from making several costly mistakes last year. The system integrates with most major payroll providers including ADP and Paychex. You can either set up an automatic data feed or do a simple export/import process. I was surprised by how easy it was to connect our messy data from three different systems. The platform has standardized templates that help format everything correctly even if your original data is inconsistent.
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AstroExplorer
Just wanted to update everyone - I tried taxr.ai after seeing it mentioned here and it's been a game-changer for our state apportionment work! The payroll data analysis feature saved me at least 40 hours of work. It automatically identified which employees created nexus in which states and calculated our apportionment percentages. The most helpful part was that it flagged several employees who had moved to different states without properly updating our HR system. Without catching this, we would have had incorrect apportionment calculations and potentially missed filing obligations in two states. The system also generates detailed documentation explaining the methodology, which gives me confidence for potential audits. If you're dealing with state apportionment for the first time, especially with remote workers, I'd definitely recommend giving it a try.
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Giovanni Moretti
If you're struggling to get answers about state tax apportionment requirements from state tax departments, I highly recommend using https://claimyr.com to actually get through to a human at the tax department. I wasted DAYS on hold trying to clarify Massachusetts' special apportionment rules before discovering this service. They basically wait on hold with the state tax departments for you and call you when they reach a representative. I was skeptical at first, but they got me through to the Massachusetts DOR in about 2 hours when I had previously spent 3 days trying. You can see how it works here: https://youtu.be/_kiP6q8DX5c This was especially helpful for getting clarification on how to handle employees who had temporarily relocated during COVID but were now on hybrid schedules. The official guidance online was super unclear, but the representative walked me through exactly how to document and apportion.
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Fatima Al-Farsi
•Wait, so they just wait on hold for you? Does this actually work? I've been trying to reach someone at the California Franchise Tax Board for literally weeks...
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Dylan Cooper
•This sounds too good to be true. I've tried those "skip the line" services before for other government agencies and they never worked. How do they actually get through when the lines are constantly jammed?
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Giovanni Moretti
•Yes, they literally wait on hold so you don't have to! Their system dials in and waits in the queue, then calls you when a representative answers. I was able to walk away from my desk and work on other tasks while they handled the waiting. They seem to have some technology that navigates the phone trees automatically and keeps the connection even during those "unexpected high call volume" situations. I don't know exactly how it works, but for California specifically, a colleague used it for the Franchise Tax Board and got through in about 3 hours when she had been trying unsuccessfully for days. Their system stays on the line even during disconnects or transfers between departments, which is where most people lose their place in line.
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Dylan Cooper
I have to admit I was completely wrong about Claimyr! After posting my skeptical comment, I decided to try it for a complex question about New York's convenience of employer rule for our apportionment calculations. I had been trying to get through to the NY Department of Taxation and Finance for over a week with no success. Claimyr got me connected to a senior tax representative within 3 hours. The rep actually provided detailed guidance on documenting our hybrid work arrangements for proper apportionment. She even emailed me a spreadsheet template they recommend for tracking employee locations. This saved our apportionment project from being delayed another week, and the information was much more specific than anything I found online. For anyone doing multi-state apportionment with remote workers, getting these clarifications directly from the state tax authorities is invaluable.
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Sofia Perez
One thing that helped me when creating our first apportionment file was understanding that different states have completely different rules. Some use the traditional three-factor formula (property, payroll, sales), others double-weight the sales factor, and many have moved to single-sales factor apportionment. For the sales factor specifically, some states use cost of performance sourcing while others use market-based sourcing. This makes a HUGE difference in where your sales are considered to occur! I'd recommend creating a master table of all states where you have nexus with columns for: - Apportionment formula used - Special industry provisions (if applicable) - Sales sourcing methodology - Due dates for returns - Any unique state adjustments required Then create your apportionment workbook based on this master reference. It saved me tons of time in the long run.
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Zoe Alexopoulos
•This is exactly the kind of insight I needed! Do you have any recommendations for sources that compile all these different state rules in one place? I'm finding that I have to go to each state's website individually which is taking forever.
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Sofia Perez
•Bloomberg Tax has a great State Tax Chart Builder that compiles all these rules in one place. It's subscription-based but worth it if you're dealing with multiple states regularly. CCH also has good resources. For a free option, the Federation of Tax Administrators (taxadmin.org) has some comparison tables that give a good overview of which states use which apportionment formulas. The Multistate Tax Commission also publishes guidelines that are helpful. Another approach is to check with your state CPA society - many have published comparison guides for their members that you might be able to access.
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Dmitry Smirnov
Don't forget about nonbusiness income! When I first did our state apportionment, I focused only on the three factors for business income and completely missed that nonbusiness income has totally different allocation rules. Things like interest income, rental income from properties not part of your regular business, and gain/loss from selling business assets often get allocated 100% to specific states rather than being apportioned. This was a painful lesson when we had a significant capital gain that year.
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ElectricDreamer
•Yes! And some states define "business income" differently than others, so what might be apportionable business income in one state could be allocable nonbusiness income in another. Totally inconsistent!
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Diego Ramirez
As someone who just went through this exact process last year, I want to emphasize the importance of getting your nexus analysis right BEFORE you start building your apportionment file. We made the mistake of creating apportionment calculations for states where we thought we had nexus, only to discover later that some states had different thresholds or that certain employee activities didn't actually create nexus. Start with a comprehensive nexus study considering: - Physical presence (employees, property, offices) - Economic nexus thresholds (sales amounts) - Click-through nexus or affiliate nexus rules - Payroll nexus thresholds Once you know exactly which states you need to file in, THEN build your apportionment methodology. Also, consider whether you need to register for nexus in any new states before your first filing - some states require registration within 30 days of establishing nexus. The remote work situation adds complexity because employee work locations can create nexus even if you don't have a physical office there. Document everything well because if you get audited, they'll want to see your methodology and supporting records.
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