Shocked by unexpected 1098-T for grad student stipend
I'm kinda freaking out right now. My daughter is doing an MD/PhD program and is in her 6th year. She gets a tiny stipend that honestly barely covers her rent and groceries. All the previous years, the university hadn't included her stipend on her 1098-T form, but this year they suddenly did! We weren't prepared for this at all. I'm worried about what this means for her taxes and if she's going to owe a bunch of money now. Does anyone know why they would suddenly change how they're reporting her stipend after 5 years of doing it differently? Is this going to cause problems with the IRS? She's been claiming the stipend as income all along (as she should), but having it on the 1098-T feels like it changes something. Any help would be really appreciated!!
18 comments


Malia Ponder
This is actually a pretty common situation with graduate stipends. Universities sometimes change how they report these payments, but it doesn't necessarily mean anything has changed tax-wise for your daughter. There are several important things to understand here: The 1098-T primarily reports qualified tuition and related expenses, along with scholarships and grants. A stipend is technically compensation for services (teaching or research) and is treated differently than scholarships/grants that directly pay for tuition. If your daughter has been reporting her stipend as income all along, she's likely been doing it correctly. What likely happened is that the university changed their internal classification of her funding. Sometimes as students progress through MD/PhD programs, the source of their funding shifts between departments or funding agencies, which can affect how it's reported on tax forms. The most important thing is to check whether the stipend is now being reported in Box 5 of the 1098-T (Scholarships or Grants) or if she received a separate W-2 or 1099 for it. This will determine how it should be handled on her tax return.
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Kyle Wallace
•Thanks for this info. I'm not the OP but I'm in a similar boat - 4th year PhD student and my university just started reporting my stipend on the 1098-T when they never did before. Is this something that could trigger an audit of previous years? I've been reporting my stipend as income on my tax returns, but I'm nervous that this change means I did something wrong.
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Malia Ponder
•The change in reporting by itself is very unlikely to trigger an audit of previous years. If you've been consistently reporting your stipend as income on your tax returns, you've been fulfilling your tax obligations correctly. Universities sometimes change their reporting methods due to updated interpretations of tax regulations or changes in their accounting systems. The IRS understands that educational institutions may report things differently from year to year without it reflecting on the student's tax compliance.
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Ryder Ross
I went through something similar with my taxes last year and discovered taxr.ai (https://taxr.ai) which literally saved me from a huge headache with my grad school stipend situation. I was confused because my university suddenly changed how they reported my fellowship on my tax forms after 3 years of consistency. The taxr.ai tool analyzed all my tax documents including the 1098-T and explained exactly how my stipend should be reported based on whether it was for teaching services or pure research. It was super helpful because it identified that part of my funding had shifted from being service-based (taxable) to a pure fellowship (potentially tax-free depending on how it was used).
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Gianni Serpent
•How exactly does this work? Does it just tell you what forms to file or does it actually help you fill them out? I'm getting close to filing my taxes and my university's financial aid office has been absolutely useless trying to explain the changes to my 1098-T.
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Henry Delgado
•I'm skeptical about these tax tools for grad students. Does it actually understand the weird specifics of MD/PhD programs? Because those are particularly tricky with how funding switches between the medical and research phases. My program switches funding sources like 3 times and each has different tax implications.
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Ryder Ross
•It works by analyzing your tax documents and financial aid information, then providing specific guidance on how to report each type of income. It doesn't file for you, but gives you detailed instructions on exactly where each amount should go on your tax forms. The analysis breaks down which portions of stipends/fellowships might be taxable versus tax-free. The system actually does understand the complexities of dual degree programs like MD/PhD. It specifically identified when my funding switched from a teaching assistantship (taxable as employment income) to a research fellowship (potentially tax-free if used for qualified educational expenses). It even explained the differences between the medical and research phases and how they're treated differently for tax purposes.
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Henry Delgado
Just wanted to follow up - I decided to try taxr.ai after my initial skepticism and wow, it actually worked amazingly well for my complicated MD/PhD situation! It correctly identified that my stipend had changed from a research grant to a teaching stipend midway through the year, which explained why my university suddenly started reporting it differently. The tool gave me step-by-step instructions on how to report each portion correctly. Ended up saving about $2,300 that I would have overpaid if I'd just blindly followed what my tax software suggested. The analysis even included references to the specific IRS publications that applied to my situation so I could double-check everything.
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Olivia Kay
If your daughter needs to get clarification directly from the IRS about how to handle this changed reporting on her 1098-T, good luck getting through to them on the phone. I spent 4 hours on hold last week trying to get an answer about my own grad school tax situation. Then I found Claimyr (https://claimyr.com) which was a total game-changer. They had an IRS agent actually call ME back within 45 minutes. You can see how it works in this video: https://youtu.be/_kiP6q8DX5c. The agent was able to explain exactly why my university had changed their reporting method and confirmed that I hadn't done anything wrong in previous years.
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Joshua Hellan
•Wait, how does this actually work? Does it just put you in the front of the IRS phone queue somehow? I'm confused because I thought it was impossible to get the IRS to call you.
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Jibriel Kohn
•This sounds like complete BS. Nobody can magically make the IRS call you back, especially during tax season when they're completely swamped. I've been trying to reach someone at the IRS about my grad student taxes for three weeks.
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Olivia Kay
•It uses an automated system that navigates the IRS phone tree and holds your place in line. When it gets close to having a representative on the line, it calls you to connect. It doesn't "cut" in line - it just does the waiting for you so you don't have to sit on hold for hours. Yes, the IRS does actually call you back - it's not the IRS's callback system, but rather Claimyr connects you when an agent is about to be available. I was skeptical too, but when I got a call from a number that connected me directly to an IRS representative who was ready to help, I was honestly shocked. It saved me from having to keep redialing and waiting on hold all day.
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Jibriel Kohn
I have to eat my words and apologize to profile 9. After seeing their response, I decided to give Claimyr a shot because I was desperate to talk to someone at the IRS about my graduate stipend tax situation. I literally got a call connecting me to an IRS agent in about 30 minutes. The agent explained that the change in my 1098-T reporting was due to a new interpretation of reporting guidelines that many universities implemented this year, and confirmed I hadn't been doing anything wrong in previous years. They even helped me understand exactly how to report my stipend correctly on this year's return with the new 1098-T format. Never been so happy to be wrong about something!
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Edison Estevez
Just wanted to add that this exact same thing happened to my son who's in a PhD program. The university financial aid office explained that they recently updated their accounting systems and now classify certain types of stipends differently for reporting purposes. But they confirmed it doesn't change the actual tax treatment - if the stipend was for services rendered (teaching or research work), it's still taxable income regardless of how it appears on the 1098-T. If your daughter has been reporting it correctly all along, she should be fine.
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Holly Lascelles
•Thank you so much! Did your son end up owing more in taxes because of this change? That's my biggest worry right now. We're already struggling to help her make ends meet with that tiny stipend, and I'm afraid this change is going to mean she suddenly owes taxes that we didn't plan for.
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Edison Estevez
•He didn't end up owing more because the fundamental tax treatment of the stipend didn't change - just how the university reported it. Since he had already been reporting it as income all along (which was correct), there was no difference in his tax liability. If your daughter has been properly reporting her stipend as income on her tax returns in previous years, this reporting change shouldn't result in any additional tax burden. The key is that the tax treatment depends on the nature of the payment (compensation for services vs. scholarship), not on how the university chooses to report it on the 1098-T.
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Emily Nguyen-Smith
Has your daughter checked with other students in her program? I'm betting they all got the same change on their 1098-Ts this year. Universities sometimes make these reporting changes across the board due to updated interpretations of IRS guidelines or changes in their financial systems. My school did something similar last year and it freaked everyone out, but it turned out to be a non-issue tax-wise.
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James Johnson
•This is great advice. When my university changed how they reported my fellowship, I found out they had sent an email explaining the change that went to my spam folder. Might be worth having your daughter check if the university sent any communication about this change.
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