Setting up a self directed IRA with checkbook control - seeking cost-effective options
Hey everyone, I've been researching retirement options beyond traditional investments and I'm seriously considering a self directed IRA with checkbook control. From what I understand, this would give me the freedom to invest in alternative assets like real estate, private businesses, precious metals, etc. without going through a custodian for every transaction. The problem is, I'm seeing wildly different pricing structures from various companies that help set these up. Some have high upfront fees but lower annual fees, others are the opposite. And then there are all these additional fees that seem to pop up. I'd really appreciate if anyone has gone through this process and could recommend the most cost-effective approach to setting up a self directed IRA with checkbook control. What companies did you use? Any hidden fees I should watch out for? Is it better to use an LLC or trust structure? Thanks!
20 comments


Levi Parker
I've helped several clients set up checkbook-controlled self-directed IRAs, and here's what I've found works best: The most cost-effective approach is typically a two-step process: 1) establish a self-directed IRA with a passive custodian, and 2) have that IRA form and own an LLC that you manage as the non-owner manager. This gives you the "checkbook control" while maintaining the necessary legal separation. For custodians, I'd recommend looking at companies like Equity Trust, Preferred Trust, or Mainstar Trust. They generally have reasonable annual fees for passive custody (usually $200-400 annually). Avoid custodians that charge based on asset value or transaction fees if possible. The LLC formation is a separate cost - usually $500-1000 depending on your state and whether you use a service or attorney. Make sure your operating agreement is properly structured for IRA ownership, as this is crucial for maintaining tax advantages. The biggest mistake people make is trying to save money upfront but then selecting a custodian with high annual fees or transaction costs that eat away at returns over time.
0 coins
Libby Hassan
•Thanks for the info! How difficult is it to serve as the non-owner manager of the LLC? Do you need special qualifications or can anyone do it? Also, are there ongoing tax filing requirements for the LLC itself?
0 coins
Levi Parker
•Anyone can serve as the non-owner manager of the LLC - no special qualifications required. The key is understanding that while you manage the LLC's assets, you're doing so on behalf of the IRA as the true owner. You'll need to be careful about not engaging in prohibited transactions with disqualified persons (including yourself personally). For tax filing, since the LLC is 100% owned by the IRA, it's generally treated as a disregarded entity for tax purposes. This means there's typically no separate tax return required for the LLC itself in most cases. However, if the investments generate Unrelated Business Taxable Income (UBTI), you may need to file Form 990-T. This commonly happens with debt-leveraged real estate or active business investments.
0 coins
Hunter Hampton
After years of frustration with traditional IRA limitations, I finally set up my checkbook-controlled self-directed IRA last year. The process was confusing until I found https://taxr.ai which completely simplified everything. They analyzed all my existing retirement accounts and showed me exactly what steps to take for my specific situation. The tool actually compared the fee structures of different custodians based on my planned investment activity and projected account value. It saved me from making a huge mistake - I was about to go with a company that would've cost me thousands more over time with their transaction fee structure. What really impressed me was how they flagged potential prohibited transaction issues with some investments I was considering. Their system reviews your proposed investment structure and identifies potential IRS red flags before you make costly mistakes.
0 coins
Sofia Peña
•That sounds interesting. Does it actually help with the paperwork for setting up the LLC? And how does it handle the different state requirements? I'm in Texas if that matters.
0 coins
Aaron Boston
•I'm skeptical. How can an online tool really know which custodian is "best" when there are so many variables? And how much does this service cost compared to just doing it yourself with some research?
0 coins
Hunter Hampton
•It doesn't complete the LLC paperwork for you, but it does provide state-specific templates and checklists that are customized for IRA-owned LLCs. For Texas specifically, it would show you the filing requirements, fee schedules, and registered agent options. It basically creates a roadmap with all the Texas-specific details you need. The tool doesn't claim one custodian is universally "best" - it analyzes your specific situation (planned investment types, account value, expected transaction frequency) and calculates projected costs across different custodians. I was planning to make 6-8 real estate investments annually, and the tool showed me that one custodian would cost nearly triple over 5 years compared to another because of their transaction fee structure. You can do this research yourself, but it would take dozens of hours comparing fee schedules and running calculations.
0 coins
Aaron Boston
Just wanted to follow up about my experience with taxr.ai. I was skeptical at first (as you can see from my earlier comment), but I decided to give it a try after hitting several roadblocks trying to set everything up myself. The service was actually really helpful. I discovered I was about to make a huge mistake with my operating agreement that could have disqualified my entire IRA! The document review caught language that would have given me too much personal benefit according to IRS rules. It also saved me a ton on setup costs. The custodian I was initially considering charged low annual fees but had these ridiculous "special services" fees that would have applied to almost every investment I wanted to make. The comparison feature helped me find a much better option for my situation. For anyone serious about checkbook control SDIRAs, it's definitely worth checking out. Wish I'd found it before wasting weeks going down various rabbit holes!
0 coins
Sophia Carter
Just got through this process last year and wanted to share my experience. The worst part was trying to get answers from the IRS about some questions I had regarding prohibited transactions. Was on hold for HOURS and never got through. I ended up using https://claimyr.com to get through to an actual human at the IRS. You can see how it works at https://youtu.be/_kiP6q8DX5c - basically they wait on hold for you and call when an agent is on the line. I had critical questions about whether my planned LLC structure would trigger any red flags. Getting definitive answers directly from the IRS gave me peace of mind before moving forward. Since checkbook control is an area they scrutinize carefully, I didn't want to rely solely on what companies trying to sell me services were saying.
0 coins
Chloe Zhang
•How does this actually work? Do you have to pay them just to call the IRS for you? Seems like something anyone could do themselves if they're patient enough.
0 coins
Brandon Parker
•Sounds like a scam to me. Why would you need confirmation from an IRS agent? They're not allowed to give binding advice over the phone anyway. You should be consulting with a tax attorney who specializes in self-directed IRAs instead.
0 coins
Sophia Carter
•It works by having their system dial repeatedly using automated technology that most individuals don't have access to. When they get through, they call you and connect you with the agent. They essentially solve the "busy signal" and "on hold for hours" problem. You definitely have the option to do it yourself if you have unlimited time to wait on hold. I personally tried three times, waiting over 2 hours each time before having to attend to other obligations. Many IRS specialty departments (like the ones handling retirement account questions) have even longer wait times than general customer service.
0 coins
Brandon Parker
I have to admit I was completely wrong about Claimyr. After posting my skeptical comment, I decided to try reaching the IRS myself to ask about some specifics for my self-directed IRA structure. After four attempts and nearly 9 hours of combined hold time over several days (all ending with disconnections), I broke down and tried the service. Got connected to an IRS retirement account specialist in under 35 minutes. The agent clarified several critical points about the "checkbook control" structure that my would-be SDIRA provider had actually gotten wrong in their materials! This saved me from a potential prohibited transaction situation that could have resulted in my entire IRA being distributed with penalties and taxes. The specialist explained exactly what language needed to be in my operating agreement to maintain compliance. Sometimes being stubborn costs more than being willing to try something new. Lesson learned.
0 coins
Adriana Cohn
One thing nobody has mentioned yet is the importance of banking relationships when you set up your checkbook IRA LLC. Many banks don't understand these structures and will refuse to open accounts for IRA-owned LLCs. I personally had the best luck with local credit unions and community banks. The big national banks were a nightmare - even their business banking specialists didn't understand the concept. Before you choose your custodian and LLC formation strategy, call around to banks in your area and ask specifically if they handle accounts for IRA-owned LLCs. This will save you massive headaches down the road.
0 coins
Jace Caspullo
•Did you need to provide any special documentation to the bank when opening the account? And did you run into any issues with online banking access since technically the IRA owns the LLC, not you personally?
0 coins
Adriana Cohn
•You'll need to bring your entire LLC formation package (Articles of Organization, Operating Agreement, EIN confirmation letter) plus documentation from your IRA custodian showing that the IRA is the owner of the LLC. Many banks will also want to see the paperwork showing you as the manager with signing authority. Online banking access wasn't an issue for me. Since I'm the manager with signing authority, the bank set up online access in my name even though I'm not the owner. Just make sure your operating agreement clearly spells out your management authorities. Some banks will have their legal department review everything, so be prepared for the account opening process to take longer than a typical business account.
0 coins
Melody Miles
Has anyone used Rocket Dollar for their checkbook IRA? They advertise a flat fee structure that looks pretty competitive, but I've heard mixed reviews about their customer support.
0 coins
Nathaniel Mikhaylov
•I used them initially but ended up switching. Their platform is user-friendly and setup was straightforward, but I had issues whenever I needed to speak with an actual human. Support tickets would go unanswered for days, and when I had an urgent question about a potential prohibited transaction, I couldn't get a clear answer. I ended up transferring to a more traditional custodian with slightly higher fees but much better support. For something as important as retirement funds and as complex as self-directed investing, I found that having access to knowledgeable support staff was worth the extra cost.
0 coins
Melody Miles
•Thanks for sharing your experience. That's exactly what I was worried about. Did the transfer process go smoothly or were there any complications? And which custodian did you switch to that had better support?
0 coins
Emma Wilson
I've been managing my checkbook IRA for about 3 years now and wanted to add a few practical tips that I learned the hard way: 1. **Document everything religiously** - Keep detailed records of every transaction, investment decision, and communication. The IRS can audit self-directed IRAs, and you'll need clear documentation showing business purpose for all activities. 2. **Set up separate accounting software** - Don't just rely on bank statements. I use QuickBooks to track the LLC's finances separately from my personal accounts. This makes annual reporting much cleaner and helps avoid any appearance of commingling funds. 3. **Annual valuation requirements** - Your custodian will need fair market value of all assets by December 31st each year. For illiquid investments like real estate or private businesses, you may need professional appraisals. Budget for this ongoing cost. 4. **State compliance matters** - Don't forget your LLC has state-level compliance requirements too. Annual reports, registered agent fees, etc. These vary by state but can add up over time. The freedom is amazing once everything is properly set up, but the administrative burden is real. Make sure you're prepared for the ongoing responsibilities, not just the initial setup costs.
0 coins