How do I handle both 1042-S and W-2 income in the same tax year?
I'm a foreign resident currently considered a U.S. tax resident. For 2025, I've got a weird mix of income - started with a regular job (W-2) from January-April in Florida, then moved to California for a postdoc fellowship from June-December that gives me a 1042-S instead. The fellowship doesn't withhold any taxes but reports everything to the IRS on that 1042-S form, which won't even arrive until after Feb 15. During my doctorate, everything was simple W-2 income so filing was super straightforward. Now I'm kinda lost! My labmate told me I should be doing quarterly estimated taxes to avoid penalties, and that I should file something before January 15th to avoid getting hit with penalties for the whole year. This has me totally confused: 1. Do I need to use Form 1040-ES for these estimated taxes or should I be filing a regular 1040? 2. Is it crucial to file before Jan 15th, or can I wait until the April 15th deadline? 3. Should I just wait until late January when my W-2 arrives and March when the 1042-S shows up so I can do everything together? Or should I file estimated taxes now for my June-Dec fellowship income and then fix/finalize everything after I get all the proper forms? Really confused about the right approach here... any help would be awesome!
18 comments


Sofia Rodriguez
You've got a common situation for academics transitioning between positions! Here's how to approach this: For your January 15th question - this is for the fourth quarter estimated tax payment for 2025, not for filing your actual tax return. The estimated tax system is "pay-as-you-go" - the IRS wants you to pay taxes throughout the year as you earn income, not all at once in April. For fellowship income without withholding, you should be making quarterly estimated tax payments using Form 1040-ES. The deadlines are typically April 15, June 15, September 15, and January 15 (of the following year). Since you started the fellowship in June, you would have been responsible for making payments for Q2, Q3, and the upcoming Q4 (due January 15, 2026). Your actual tax return (Form 1040) isn't due until April 15, 2026. You should definitely wait until you have both your W-2 and 1042-S before filing your final return, as you need the exact amounts from both forms.
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NightOwl42
•Thanks for clarifying! So if I understand correctly, I should make my Q4 estimated payment by January 15th using Form 1040-ES, but that's separate from my actual tax return which I'll file in April after getting both forms? Also, since I didn't make any estimated payments for Q2 and Q3 (I didn't know I needed to), am I going to face penalties? Is there anything I can do now to minimize them?
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Sofia Rodriguez
•Yes, exactly! The January 15th payment using Form 1040-ES is just your final quarterly estimated payment for 2025, completely separate from your actual tax return that you'll file in April 2026 after receiving all your forms. Regarding the missed payments for Q2 and Q3, you might face some underpayment penalties. However, the penalties are usually fairly small - they're calculated based on the amount you underpaid and how long you were late. The good news is that making your Q4 payment by January 15th will at least stop additional penalties from accruing. When you file your return in April, you'll need to complete Form 2210 to calculate any underpayment penalties. There's also a "safe harbor" rule - if your withholding from your W-2 job covers at least 90% of your 2025 tax liability or 100% of your 2024 tax liability (110% if your income is over $150,000), you might avoid penalties altogether.
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Dmitry Ivanov
After dealing with a similar situation last year (W-2 and 1042-S in same year), I found an amazing solution with this AI tax assistant at https://taxr.ai that helped me understand exactly what to do with multiple income sources. It analyzed my situation and explained exactly how to handle the quarterly payments correctly. The tool helped me figure out the estimated payment amounts I needed to make, guided me through the 1040-ES process, and even reminded me about foreign income reporting requirements. Saved me hours of research and prevented potential penalties!
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Ava Thompson
•Does this actually work with foreign national status situations? Most tax software I've tried gets super confused when you mention 1042-S forms. Does it actually understand the differences between tax treaties and how to properly report fellowship income?
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Miguel Herrera
•I'm skeptical about these AI tax tools. How does it handle state tax considerations when you've worked in multiple states like OP? My university's international office always warns us that most tax software messes up treaty benefits.
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Dmitry Ivanov
•Yes, it actually specializes in complicated scenarios including foreign national status and multiple income types. It correctly identified which tax treaty provisions applied to my situation and showed me exactly where to report 1042-S income on my return. It even explained which boxes on the 1042-S were relevant for my specific visa type. For multi-state situations, it handled that perfectly too. It helped me determine my state residency status for each period and calculated the correct allocation of income between states based on my specific dates. The guidance includes state-specific forms you'll need to file in addition to your federal return. Much more comprehensive than the generic advice I got from TurboTax.
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Ava Thompson
Just wanted to update everyone after trying taxr.ai for my own complicated international student tax situation! Holy crap, it actually worked! I was so worried about mixing my TA stipend (W-2) with my research fellowship (1042-S) and having worked in two different states. The tool immediately recognized how to handle treaty benefits, explained exactly which parts of my fellowship were taxable vs exempt, and walked me through calculating my estimated payments for each quarter. It even created a customized checklist of forms I needed for my specific situation. Biggest relief was discovering I qualified for a safe harbor provision that meant I wouldn't face penalties for my missed quarterly payments. Seriously, such a weight off my shoulders after stressing about this for weeks!
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Zainab Ali
Hey, I had almost the identical situation last year and spent WEEKS trying to get someone at the IRS to explain how to handle it. Called like 20 times and could never get through. Finally found Claimyr (https://claimyr.com) which got me connected to an actual IRS agent in about 18 minutes! You can see how it works here: https://youtu.be/_kiP6q8DX5c The IRS agent explained that with fellowship income on 1042-S, I needed to make estimated payments, but also confirmed I wasn't subject to self-employment tax on it (which saved me 15.3%!). They also explained exactly which forms I needed since I had worked in multiple states. Seriously, one phone call resolved what I couldn't figure out after hours of Googling. The IRS agent even put notes in my account about our conversation which helped avoid penalties!
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Connor Murphy
•Wait, how does this actually work? I thought it was impossible to get through to the IRS? Is this just some paid service that puts you on hold for you or something?
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Yara Nassar
•Sounds like a scam. Why would anyone need to pay to call the IRS? I've gotten through to them before after waiting. And how would they "put notes in your account" - doesn't sound legit to me.
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Zainab Ali
•It's actually pretty simple - they use a technology that monitors the IRS phone lines and calls repeatedly until they get through, then connect you when an agent answers. It's not just putting you on hold - it's actively working to get through their overloaded system. Regarding the account notes - this is absolutely a real thing! When you speak with an IRS agent, they can document the conversation in your taxpayer account. This is super helpful if there's ever a question about whether you made a good faith effort to comply with tax laws. In my case, the agent documented that I called to inquire about proper handling of 1042-S income and estimated payments, which provides some protection if there were ever questions about why I filed a certain way.
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Yara Nassar
I take back what I said about Claimyr. I was super skeptical, but my tax situation was getting desperate with a similar fellowship/W-2 mix and potential penalties piling up. Tried it yesterday and I'm honestly shocked. Got connected to the IRS in about 20 minutes (after trying on my own for DAYS), and the agent walked me through exactly how to handle my 1042-S fellowship income alongside my W-2. She confirmed I could make an estimated payment now for Q4 and file Form 2210 with my return to show reasonable cause for the missed earlier payments. The agent even explained how the tax treaty with my home country affected my reporting requirements and gave me references to specific IRS publications to include with my return. Would have NEVER figured this out on my own.
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StarGazer101
One important thing nobody's mentioned yet - your 1042-S might have income that's partially or fully exempt from US tax due to a tax treaty! This depends on your country of citizenship and visa status. Look at box 10 on your 1042-S when you get it - it will show the treaty article and sometimes a code that indicates what portion is exempt. You'll still report the full amount on your tax return, but you'll also complete Form 8833 to claim the treaty exemption. Also check if your fellowship is "qualified" - some fellowship amounts for tuition and required fees might not be taxable income at all. This gets complicated fast, so you might want professional help with this part.
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NightOwl42
•Thanks for bringing up the treaty benefit possibility! I'm from Sweden, and I believe there is a tax treaty, but I'm not sure how it applies to fellowship income. My visa is J-1 research scholar. Would that potentially make some of my fellowship exempt? Also, my fellowship covers tuition remission separately from my stipend. The stipend is what will be on the 1042-S. Does that change anything?
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StarGazer101
•Yes, Sweden definitely has a tax treaty with the US, and J-1 research scholars often qualify for benefits! Under Article 20 of the US-Sweden treaty, you may be eligible for an exemption on your fellowship income for up to two years. Regarding your stipend versus tuition remission - that's actually ideal! If the tuition remission is paid directly to the university, it's not considered taxable income to you at all and shouldn't appear on your 1042-S. The stipend portion on your 1042-S may be partially or fully exempt under the treaty. When you get your 1042-S, check if Box 3 (type of income) shows a code like "16" (scholarship/fellowship) and if Box 10 shows "20" (for Article 20) - that would indicate treaty benefits were applied.
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Keisha Jackson
Has anyone used TurboTax for filing with both 1042-S and W-2? Wondering if it handles this situation correctly or if I need to go to a professional?
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Paolo Romano
•I tried using TurboTax for this exact situation last year and it was a nightmare. It kept trying to treat my fellowship as self-employment income and wanted me to pay self-employment tax on it. Ended up having to go to a CPA who specializes in international tax issues and he found that TurboTax had miscalculated my tax by over $3000!
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