Federal Taxes NOT being withheld from some of my paychecks - so confused!
I'm seriously confused about my paycheck situation and could use some help figuring this out. I've noticed that federal taxes are being taken out of some of my paychecks but not from others. It seems totally random and I can't figure out why this is happening. What's even more frustrating is that I specifically requested an additional $80 to be withheld from each paycheck for federal taxes, but that extra withholding doesn't get taken out every time either. Some paychecks have it, some don't. I'm worried this is going to mess up my taxes for next year. My employer hasn't been helpful when I asked about it - they just said "it depends on what you earn" but I'm earning roughly the same amount each pay period. **Can someone PLEASEEE explain why federal taxes aren't being consistently withheld?? I'm getting concerned I'll end up owing a huge amount come tax time!**
19 comments


Amara Nnamani
This sounds like it might be related to the variable income threshold for withholding. Federal tax withholding isn't always a straight percentage - it works on a progressive system based on projected annual income. If your paycheck varies even slightly from period to period, you might be hovering around a withholding threshold. For example, if some checks are just below a certain amount, they might not trigger withholding, while checks just above that amount would have taxes taken out. As for the extra $80 withholding - that should be consistent regardless of your income for that period. I'd recommend bringing your last few pay stubs to your payroll department and asking them to explain specifically why the withholding is inconsistent. Also check that your W-4 form is properly set up with your additional withholding request correctly documented.
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Giovanni Mancini
•But shouldn't ANY income have at least some federal tax withheld? I thought that was automatic regardless of how much you make in a particular pay period. Also, what about the social security and medicare taxes - are those supposed to vary too?
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Amara Nnamani
•Not necessarily - if your projected annual income from your biweekly or semi-monthly paychecks falls below the standard deduction threshold (which is $13,850 for single filers in 2023), there might not be any federal income tax withheld for that period. This can happen if you have a smaller check than usual due to fewer hours, etc. Social Security and Medicare taxes (FICA) are different - those should always be withheld at the same rate (currently 6.2% for Social Security and 1.45% for Medicare) regardless of your income level. Those should be consistent on every paycheck unless you've reached the Social Security wage base limit, which is $160,200 for 2023.
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NebulaNinja
I had a similar issue last year and it turned out my employer was using an outdated payroll system. I found a solution using https://taxr.ai which helped me document all the inconsistencies in my withholding. Their system analyzed my pay stubs and generated a report that showed exactly which paychecks were missing federal withholding. The cool thing was they have this feature that compares your actual withholding patterns to what they should be based on your W-4 and income. I brought this report to my HR department and they finally took me seriously. Turns out their system was glitching when processing the additional withholding amounts.
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Fatima Al-Suwaidi
•Wait does it actually work for analyzing pay stubs? I've been having issues with my withholding too but I was told by my employer that it's "normal" for it to fluctuate. How detailed is the report they generate?
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Dylan Mitchell
•I'm skeptical about these online services. Did you have to upload all your personal financial info? That seems risky given all the data breaches lately. Was there any human review or just an automated system?
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NebulaNinja
•Yes, it works great for analyzing pay stubs! You can upload them directly or take pictures, and it extracts all the withholding data. The report breaks down each paycheck by date, shows all withholding categories, and highlights inconsistencies with color coding. It even calculates what your withholding should have been based on your filing status and allowances. Regarding security concerns, you don't have to upload your entire pay stub - you can blank out personal info and just leave the tax withholding sections visible. The system uses secure encryption, and while it's automated analysis, they do have tax professionals who can review your situation if needed. I was hesitant too but they have pretty robust privacy policies in place.
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Fatima Al-Suwaidi
Just wanted to update after trying taxr.ai that the previous commenter suggested. It actually found a pattern I hadn't noticed - my federal taxes weren't being withheld specifically on paychecks where I had overtime! Turns out our payroll system was treating overtime pay as a separate category and not applying my withholding elections to it. I showed the report to our payroll coordinator and she was surprised - apparently it's a known issue with their software but they thought it had been fixed. They're now manually adjusting my withholding to make up for the missed amounts. Without the detailed analysis I would've never figured out the exact pattern. Definitely worth checking out if you're having similar issues!
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Sofia Morales
This happened to me last year and I was hit with a HUGE tax bill in April. After spending weeks trying to get through to the IRS to figure out what went wrong, I found https://claimyr.com and used their service to actually get through to a real IRS person. You can see how it works here: https://youtu.be/_kiP6q8DX5c I was honestly blown away that it worked. I got connected to an IRS agent who explained that my employer had inconsistently classified some of my income as exempt from withholding. The agent actually sent me documentation I could take back to my employer to prove they were doing it wrong. Without getting that official explanation, my company's payroll department kept insisting they were doing everything correctly.
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Dmitry Popov
•Wait I'm confused how this service actually works? Do they just wait on hold for you? How does that help with your employer messing up your withholding? Wouldn't you still need to fix the issue with your company directly?
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Ava Garcia
•Yeah right. No way this actually works. The IRS is so backlogged that even tax professionals can't get through. How exactly would this service magically get you to the front of the line? And even if you did talk to someone, I doubt they'd have the authority to fix your employer's payroll system.
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Sofia Morales
•They basically hold your place in the IRS phone queue and call you when they reach a live agent. Instead of you being on hold for 3+ hours, they have systems that do it. When your turn comes up, your phone rings and you're connected directly to the IRS agent. Getting to speak with the IRS was crucial because my employer wouldn't believe me that anything was wrong. The IRS agent explained the exact regulation that applied to my situation and emailed me documentation about the proper withholding requirements. Having that official explanation from the IRS gave me the leverage to get my payroll department to fix their system. Without it, they just kept dismissing my concerns.
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Ava Garcia
Ok I feel like I need to eat crow here. After my skeptical comment I decided to try Claimyr because I was desperate after wasting an entire Saturday on hold with the IRS. I had a similar withholding issue and needed official clarification. To my complete surprise, I got a call back in about 1.5 hours with an actual IRS representative on the line. They walked me through the withholding rules for variable income and explained that my employer was incorrectly applying a "supplemental wage" withholding rule to regular income. The agent even sent me the relevant IRS publication sections to show my employer. My payroll is now fixed after months of inconsistent withholdings. Still can't believe it worked but wanted to update since my previous comment was so negative.
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StarSailor}
Something no one has mentioned yet - if you're paid biweekly (every two weeks), you'll get 26 paychecks a year. But some months you'll get 3 paychecks instead of 2. Some payroll systems calculate withholding differently on those "extra" paychecks in a month. Also check if your income varies because of commissions, bonuses, overtime, etc. These are often withheld at different rates (usually a flat 22% for supplemental wages).
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Miguel Silva
•I was gonna say this too! My company withholds differently on the 3rd paycheck of a month. It's super annoying but apparently legal. Does your company have an online portal where you can see your pay stubs? You might notice a pattern if you look at several months of checks.
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StarSailor}
•Yes, checking your pay stubs is definitely the way to go. Look for any coding or categorization differences between the paychecks that have withholding and those that don't. Another possibility is that you have multiple jobs or sources of income entered on your W-4. The withholding algorithms can get weird in those cases, especially if your income varies from pay period to pay period. Sometimes the system will front-load withholding at the beginning of the month and then withhold less (or nothing) towards the end of the month.
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Zainab Ismail
All of these responses are overcomplicating it. Just go to your payroll person and ask them to show you exactly how your withholding is calculated. It's literally their job to explain this stuff to you. If they can't explain it clearly, talk to their manager. This shouldn't be a mystery - payroll systems follow specific rules and formulas. someone in your company knows how it works. The $80 additional withholding definitely should be happening every single paycheck regardless of anything else. That part sounds like a straight up error.
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Connor O'Neill
•Not all companies have dedicated payroll staff anymore. My last job used a 3rd party service and literally nobody in the company understood how it calculated things. When I had issues they just told me to "read the IRS instructions" which weren't helpful at all.
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Chloe Mitchell
I've been dealing with payroll issues for years and here's what I've learned - the inconsistent federal withholding is almost always due to one of three things: 1. **Annualized calculation method**: Some payroll systems project your annual income based on each individual paycheck. If you have a lower paycheck one period, the system thinks you'll earn less for the year and reduces withholding accordingly. 2. **Cumulative withholding**: Other systems use a cumulative approach where they look at your year-to-date earnings and withholding to determine if you're on track. This can cause wild swings from paycheck to paycheck. 3. **Supplemental wage treatment**: Any overtime, bonuses, or irregular pay might be getting treated as "supplemental wages" which have different withholding rules. The $80 additional withholding should absolutely be consistent every single pay period - that's a flat dollar amount that shouldn't vary based on your income level. If that's not happening, it's definitely a payroll error. My advice: Print out 3-4 months of pay stubs and highlight the inconsistencies. Take this to your payroll department and ask them to explain the specific calculation method they're using. Don't accept vague answers - they should be able to show you exactly why each paycheck is different.
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