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I went through this exact same situation about 5 years ago with my manufacturing business. The good news is that this is more fixable than you might think, but you need to act strategically. First, definitely amend the open years (typically 2021-2023) to claim the amortization expenses you should have taken. This will generate refunds and establish a clear paper trail showing you're correcting the error. For the older years beyond the amendment window, create a detailed "tax benefit not received" file. Include copies of all original returns showing Form 4562 with the amortization alongside the Schedule C that didn't include it. When you eventually sell, this documentation will support adjusting your depreciation recapture calculations. One critical point - make sure your accountant understands this issue going forward. Many tax software programs require manual entry to transfer amortization from Form 4562 to Schedule C. It's not automatic in most systems, which is why this happens so frequently. Also consider having a tax professional review your other business assets for similar issues. If goodwill amortization wasn't flowing through properly, there might be other depreciation items with the same problem. Better to catch everything now rather than discover more issues later.
This is incredibly helpful advice, thank you! I'm curious about one aspect - when you mention creating a "tax benefit not received" file, did you have any specific format or organization that worked well? I want to make sure I'm documenting this properly for potential future scrutiny. Also, regarding the review of other business assets, that's a great point I hadn't considered. We have equipment depreciation and some other intangible assets that might have similar issues. Did you end up finding other problems when you did your comprehensive review?
This is a really insightful thread - I'm dealing with a similar issue but with Section 179 equipment deductions that weren't properly flowing through to my Schedule C. Reading through everyone's experiences here has been incredibly helpful. One thing I wanted to add based on my research into this type of issue: when you're documenting everything for future sale purposes, make sure to also keep records of any depreciation schedules or asset tracking spreadsheets your business maintained. The IRS may want to see that you were consistently tracking the assets and their depreciation even if you weren't claiming the tax benefit. Also, for those mentioning the 481(a) adjustment approach - that's definitely worth exploring with a qualified tax professional. In my case, my CPA determined it was actually the cleaner solution since we had multiple years of similar errors across different asset categories. It allowed us to make one comprehensive adjustment rather than piecemeal amendments. The key lesson here seems to be that tax software automation isn't foolproof, and having a good system for reviewing how different forms connect to each other is crucial for business owners. Thanks to everyone who shared their experiences - this has been really educational!
This is exactly the kind of high-level S-corp planning that requires professional guidance. At $2.7M, you're in territory where small mistakes can be very expensive. One key point that hasn't been fully emphasized: the tax treatment is the same whether you take distributions or leave money in the S-corp - you'll pay personal income tax on all $2.7M regardless. The only real tax savings comes from the salary vs. distribution split, where distributions avoid payroll taxes. For your situation, I'd suggest getting a formal reasonable compensation study done before making any decisions. The IRS scrutinizes high-income S-corp owners much more closely, and having proper documentation of your salary determination could save you significant audit costs down the road. Also consider timing - if this is a one-time windfall vs. ongoing income, that affects what salary level would be considered reasonable. A business owner making $2.7M consistently would likely need a higher salary than someone who had an exceptional year due to a large contract or sale. The 37% federal rate is just income tax - you'll need to add payroll taxes on the salary portion, but those are capped for Social Security. Most of your income would only face Medicare taxes (2.9% combined) plus the 0.9% additional Medicare tax on high earners.
This is really helpful perspective, especially the point about one-time windfall vs ongoing income. I hadn't considered how that might affect what's considered "reasonable" for salary determination. The tax treatment being identical for distributions vs retained earnings is something I think a lot of S-corp owners misunderstand. It seems like the only real decision points are: 1) What's the optimal salary/distribution split to minimize payroll taxes while staying defensible, and 2) Whether to actually distribute the money or keep it in the business for operational reasons. Given the high stakes at this income level, the formal compensation study seems like a no-brainer. Do you know roughly what these studies typically cost? I'm trying to weigh that against the potential audit exposure and back-tax risks that others have mentioned. Also curious - when you mention timing considerations, are there any strategies around spreading income across tax years to potentially lower the overall tax burden, or does the pass-through nature of S-corps make that impossible?
Great question about compensation studies and timing strategies! Formal reasonable compensation studies typically run anywhere from $2,500 to $8,000 depending on complexity and the firm doing the analysis. At your income level, this is definitely worthwhile insurance - I've seen audit settlements that cost 10-20x that amount. Regarding timing strategies, the pass-through nature does limit some options, but there are still planning opportunities. You can't defer the tax on S-corp income to future years since it all passes through in the year earned. However, you can time when you actually distribute the cash (separate from the tax obligation), and you might have some control over when certain income is recognized depending on your accounting method. For salary timing, you do have some flexibility - you could potentially adjust your salary up or down during the year based on how profits are tracking, as long as you end up with a reasonable annual amount. Some businesses pay higher salaries early in profitable years, then reduce them if profits don't materialize as expected. The key is having documentation for whatever approach you take. At $2.7M, you're absolutely in the zone where the IRS pays attention, so every decision should be defensible with clear business reasoning and market data.
This thread has been incredibly helpful - thank you all for sharing your experiences! As someone just starting to navigate S-corp planning with a growing business, the range of perspectives here really highlights how nuanced this issue is. What strikes me most is the consensus that at high income levels like $2.7M, the documentation and defensibility aspect becomes crucial. The stories about audit consequences are sobering, and it seems like the relatively small cost of a formal compensation study is really just smart risk management. I'm curious though - for those who have gone through this process, how often do you update your reasonable compensation analysis? Is this something you revisit annually, or only when there are significant changes in business income or structure? Also, @Miguel Hernández, your point about timing salary adjustments during the year is interesting. Do you know if there are any IRS guidelines about how frequently you can adjust S-corp owner salary, or is it pretty flexible as long as the annual total is reasonable?
I'm really sorry to hear about this situation - it's exactly the kind of inherited IRA mistake that can be financially devastating. Based on everything shared in this thread, you definitely have multiple paths forward and shouldn't give up. One thing I'd add to all the excellent advice already given: make sure you're working with a tax professional who specifically has experience with inherited retirement account issues. Not all CPAs or tax preparers are familiar with the nuances of inherited IRA rules and the various relief provisions available. Also, when you're documenting everything for your various complaints and relief requests, focus heavily on the fact that you explicitly sought professional guidance specifically because you wanted to avoid making mistakes with inherited accounts. This demonstrates that you acted reasonably and in good faith - you didn't try to handle complex retirement account transfers on your own, you hired a professional specifically to avoid errors. The combination of IRS relief procedures (Revenue Procedure 2020-46), FINRA complaints, potential E&O insurance claims, and state insurance commissioner involvement gives you multiple shots at recovering most of this money. Even if each avenue only partially succeeds, the combined effect could significantly reduce your financial exposure. Document every phone call going forward, save every email, and don't let Lincoln Financial or the advisor minimize this as a "simple misunderstanding." This was a fundamental error in retirement account handling that any financial professional should have known to avoid.
This is such valuable advice about finding a tax professional with specific inherited IRA experience. I'm realizing now that my current tax preparer, while competent with regular tax situations, might not have the specialized knowledge needed for this complex situation. Do you have any suggestions for how to find a CPA or tax attorney who specifically deals with inherited retirement account issues? Should I be looking for certain certifications or asking specific questions when I interview potential professionals? Also, your point about emphasizing that I sought professional guidance specifically to avoid mistakes is really important. I think I need to be more assertive in my communications about this - I didn't just stumble into this situation, I actively tried to do the right thing by hiring what I thought was a qualified professional. The idea that multiple partial successes could add up to significant relief is encouraging. Even if I can't get the full $30K back, reducing it to a more manageable amount would make a huge difference. Thank you for helping me see this as a multi-front approach rather than just hoping for one magic solution.
This is an incredibly frustrating situation, and I feel terrible that you're dealing with such a massive financial hit due to someone else's professional negligence. As someone who has navigated IRS issues before, I wanted to add a few thoughts to the excellent advice already shared. First, when you contact Lincoln Financial's compliance department, be very specific about the financial damages and timeline. Don't just say "the advisor made a mistake" - clearly state that their advisor's incorrect guidance has resulted in $30K in unexpected taxes and penalties that you would not have incurred if the transfer had been done properly as an inherited IRA rollover. Also, consider requesting a meeting with a supervisor or compliance officer rather than just submitting a written complaint. Sometimes having a live conversation where you can explain the full impact helps them understand the severity of the situation. They may be more motivated to find a resolution when they realize the scope of their advisor's error. One additional point about documentation - if you have any marketing materials, business cards, or website information where the advisor or Lincoln Financial promoted expertise in retirement planning or inherited accounts, save all of that. It strengthens your case that you reasonably relied on their claimed expertise. The fact that multiple people here have had success with various relief procedures gives me hope for your situation. This is clearly a case where professional advice led to an incorrect action, which is exactly what many of these relief provisions are designed to address. Don't give up - you have legitimate grounds for relief through multiple channels, and $30K is absolutely worth fighting for.
This is incredibly helpful advice about being specific with Lincoln Financial's compliance department. You're absolutely right that I need to clearly articulate the $30K financial impact rather than just describing it as a "mistake." I'm definitely going to request a meeting with a compliance supervisor as you suggest. Having a live conversation where I can walk through exactly how their advisor's guidance led to this massive tax bill might be more impactful than just submitting paperwork. Your point about saving any marketing materials is spot on. I actually do have some brochures and their website information where they specifically tout their retirement planning expertise. If they were marketing themselves as qualified to handle inherited IRA situations, that should definitely strengthen my case that I reasonably relied on their professional knowledge. Reading through all the responses in this thread has been eye-opening. I went from feeling completely helpless about this $30K mistake to realizing I have multiple legitimate avenues for relief. The combination of IRS procedures, regulatory complaints, and potential insurance claims gives me real hope that I can recover most of this money. Thank you for the encouragement to keep fighting this. Sometimes you need to hear from others that your situation is worth pursuing rather than just accepting a devastating financial loss.
Has anyone considered the electric vehicle tax credits instead? With the new incentives in 2025, you might be better off buying an EV or plug-in hybrid rather than leasing a gas vehicle. Some of the credits are pretty substantial now and can significantly offset the purchase price.
The EV credits are definitely worth looking into, but be aware they phased in some new requirements this year. The vehicle has to be assembled in North America, and there are price caps ($80k for vans/SUVs/trucks, $55k for other vehicles). Plus, if you're looking at the used EV credit, there are income limits. I almost got caught by this - thankfully my accountant flagged it before I made a purchase assuming I'd get the full credit.
Great question about Section 179 and leasing! I went through this exact dilemma last year with my consulting business. One thing that really helped me understand the difference was realizing that with leasing, you're essentially "renting" the vehicle, so the depreciation benefits stay with the actual owner (the leasing company). But don't let that discourage you from leasing - there are still solid tax benefits! Since you mentioned you typically don't keep cars longer than 3 years anyway, leasing might actually align well with your habits. With 50% business use, you can deduct 50% of your lease payments, plus 50% of gas, maintenance, and other vehicle expenses if you go the actual expense route. The timing question you asked is important too - yes, you can start taking deductions as soon as you begin the lease this year, but only for the portion of the year you actually had the lease. So if you lease in November, you'd get 2 months of deductions for 2025. One more consideration: have you looked into whether any vehicles you're considering qualify for the business use of electric vehicle credits? Sometimes the combination of lease incentives plus tax credits can be surprisingly beneficial, even without Section 179. Keep those mileage logs detailed - the IRS loves documentation on vehicle deductions!
This is really helpful context about the ownership distinction! I'm actually in a similar boat - running a small consulting practice and trying to figure out the best vehicle strategy. One follow-up question on the electric vehicle angle you mentioned: If I lease an EV, can I still benefit from any of the federal tax credits, or do those only apply to purchases? I've been seeing conflicting information online about whether lessees can access any portion of the EV incentives through reduced lease payments or other mechanisms. Also, when you say "keep those mileage logs detailed" - what level of detail did you find the IRS expects? Just start/end locations and business purpose, or do they want more granular information? Thanks for sharing your experience - it's reassuring to hear from someone who's actually navigated this decision recently!
Giovanni Rossi
One thing to consider is audit support! I used Free Tax USA last year and got a letter from the IRS questioning some of my deductions. Free Tax USA's help section had exactly what I needed to respond correctly, but they don't provide direct representation if you get audited unless you pay extra for their "Audit Defense" add-on when you file. Not sure about Tax Slayer's audit support, but worth looking into if that's a concern for you!
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Fatima Al-Maktoum
•I can answer about Tax Slayer - their basic package doesn't include audit support either. You have to upgrade to their Premium or Self-Employed tiers to get that (~$45-70 range). Honestly though, for simple returns like what OP described, the chance of a serious audit is pretty low.
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Liam Sullivan
I switched from TurboTax to Free Tax USA two years ago and haven't looked back! For your situation (W2, mortgage interest, student loan interest), Free Tax USA will handle everything perfectly. The interface is clean and straightforward - maybe not as hand-holdy as TurboTax, but honestly that's a good thing because you can see exactly what's happening with your return. One tip: make sure to take advantage of their free review feature before filing. It caught a small error I made entering my mortgage interest that could have delayed my refund. The state return fee ($14.99 in most states) is totally worth it compared to what you'd pay elsewhere. I've recommended it to several friends and family members, and everyone has been happy with the switch. The money you save can go toward something much more enjoyable than tax software!
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