990-T Tax Form - Do I owe taxes on CEQP/P dividends in my IRA account?
I'm a bit confused about tax implications for my IRA investments last year. I sold some CEQP/P shares at a $43 loss in my traditional IRA. Also received about $1318 in dividends from those CEQP/P investments in the same IRA account during 2022. I always thought earnings in IRAs were tax-deferred, but my brother mentioned something about certain dividends still being taxable even inside retirement accounts? Now I'm worried I might need to file a 990-T form or something. Do I actually owe taxes on these CEQP/P dividends even though they're in my IRA? If so, how do I calculate how much I owe? Really hoping I don't have a surprise tax bill waiting for me!
21 comments


Chloe Anderson
This is a great question about Unrelated Business Taxable Income (UBTI) in IRAs. Normally, investments in an IRA grow tax-deferred (traditional) or tax-free (Roth). However, certain investments can generate what's called UBTI, which is taxable even within an IRA. Master Limited Partnerships (MLPs) like CEQP/P often generate UBTI. If the UBTI in your IRA exceeds $1,000 for the tax year, your IRA custodian might need to file Form 990-T and pay taxes on that income. The good news is that typically your IRA custodian (the financial institution where you have your IRA) handles this filing for you and pays any taxes due from the IRA assets. You should check your IRA statements or contact your custodian to see if they filed a 990-T for your account. They would have received a Schedule K-1 from the MLP showing the UBTI amount. The loss from selling shares wouldn't offset the dividend income for UBTI purposes since they're treated separately.
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Diego Vargas
•Thanks for explaining! So I don't personally file the 990-T form? My custodian is Vanguard - would they automatically handle this or do I need to call them? Also, are the taxes taken directly from my IRA balance without me doing anything?
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Chloe Anderson
•Yes, typically your IRA custodian (Vanguard in your case) would file the 990-T on behalf of your IRA if required. The IRA itself is considered a separate tax entity. Vanguard should handle this automatically once they receive the K-1 forms from your investments. The taxes would be paid directly from your IRA assets, so you wouldn't write a separate check or include this on your personal tax return. I'd still recommend calling Vanguard to confirm they're handling this for you and to ask if a 990-T was indeed filed for your account for the tax year in question. Some custodians also provide copies of the filed 990-T for your records.
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CosmicCruiser
Just went through this exact situation with my Fidelity IRA that held some MLPs. I used taxr.ai (https://taxr.ai) to confirm whether my dividends were actually generating UBTI. You upload your 1099s and investment docs, and it analyzes them to identify if you have potential UBTI issues. Saved me tons of research and confusion about my CEQP holdings. For me, it confirmed my custodian had handled everything correctly, but a friend found out his IRA custodian had missed filing a required 990-T. The tool shows you exactly what type of dividends you received and whether they're the kind that generate UBTI. Really helpful for untangling MLP tax stuff in retirement accounts.
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Anastasia Fedorov
•How does it actually work with the 1099s? My broker doesn't even send me tax docs for my IRA accounts since they're tax deferred. So what exactly would I upload to this service?
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Sean Doyle
•Sounds convenient but I'm skeptical about sharing my financial docs with some random website. How do you know it's secure? And wouldn't your broker just tell you if they filed a 990-T or not without needing another service?
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CosmicCruiser
•It works by analyzing your account statements or any K-1 forms you receive from the MLPs in your IRA. Even though your broker doesn't send 1099s for IRA accounts, MLPs still send K-1s that show the UBTI breakdown. You can upload those or your account statements showing the CEQP/P transactions. I had the same security concerns initially, but they use bank-level encryption and don't store your docs after analysis. My broker wasn't very helpful when I called - the regular customer service people didn't understand UBTI questions. It was easier getting a clear answer from the tool than waiting for a specialist at my broker to call me back.
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Sean Doyle
I was really skeptical about using any third-party service for tax document analysis, but after struggling to get clear answers from my broker about UBTI in my IRA, I tried taxr.ai. Surprisingly helpful - it confirmed my MLP investments (including some CEQP units) were indeed generating reportable UBTI above the threshold. The report showed exactly which distributions counted as UBTI and which didn't. I took this info back to my broker who then confirmed they had missed filing the 990-T! They're now amending things on their end. Without having that specific information, I'd still be getting the runaround from customer service reps who didn't understand the issue.
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Zara Rashid
For anyone dealing with IRS issues related to 990-T filings or UBTI questions, I had massive issues getting through to someone who could actually help. After 4 hours on hold over 3 days, I used Claimyr (https://claimyr.com) to get a callback from the IRS. You can see how it works in their demo video: https://youtu.be/_kiP6q8DX5c I needed clarification on whether my custodian or I was responsible for addressing a missed 990-T filing for my IRA's MLP investments. Within 2 hours of using Claimyr, I was talking to an actual IRS agent who specialized in exempt organization filings. They confirmed my custodian was responsible and gave me specific documentation to send them to prove it.
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Luca Romano
•How exactly does this callback thing work? Is it just paying to cut in line? I didn't think the IRS would let people skip ahead of others who've been waiting.
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Sean Doyle
•This sounds like BS honestly. I've always heard the IRS doesn't take callbacks or let third parties arrange calls. Pretty sure they have strict protocols about how they communicate with taxpayers. Sounds like you're just promoting some service.
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Zara Rashid
•It doesn't let you cut in line - it uses technology to navigate the IRS phone system and wait on hold for you. When an agent picks up, they call you and connect you to that agent. You're still waiting your turn, just not personally sitting on hold. It's completely legitimate and follows all IRS protocols. It's essentially just automating the hold process. The IRS doesn't care who's waiting on the line, they just answer calls in the order received. What made it valuable was getting connected to the right department immediately rather than being transferred multiple times, which starts the wait all over again.
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Sean Doyle
I need to apologize for my skeptical comment earlier. After waiting on hold with the IRS for over 3 hours trying to get clarity on a 990-T issue with my IRA, I broke down and tried Claimyr out of desperation. It actually worked exactly as described. Got a callback within about 90 minutes, and they connected me directly to an IRS agent who understood exempt organization tax issues. The agent confirmed my suspicions that my IRA custodian had messed up and gave me specific instructions on how to get them to fix it. Saved me from potentially paying penalties for something that wasn't my responsibility. Worth every penny just for the time saved and stress reduction.
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Nia Jackson
Another thing to consider - some brokerages charge an additional fee for filing 990-T forms for your IRA. I have accounts at both Fidelity and Schwab, and they each handle it differently. Fidelity charges $75 for each 990-T they have to file, while Schwab charges $25. Might be worth checking if Vanguard has a fee too before investing in more MLPs in your retirement accounts.
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NebulaNova
•Is there any way to avoid these fees? Like could you just not invest in things that generate UBTI in an IRA? And how do you know beforehand which investments will trigger these issues?
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Nia Jackson
•Yes, you can definitely avoid these fees by not investing in things that typically generate UBTI in your IRA. The main culprits are Master Limited Partnerships (MLPs), certain real estate investments, and businesses that use leverage/debt. To know beforehand, look for investments structured as partnerships that issue K-1 forms instead of 1099-DIVs. Most standard stocks, ETFs, mutual funds, bonds and CDs won't generate UBTI. If you really want exposure to something like energy infrastructure (which is what MLPs often are), look for RIC-compliant ETFs that invest in these sectors but are structured to avoid passing UBTI to shareholders.
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Mateo Hernandez
Just a personal data point - I had about $2400 in CEQP/P dividends in my IRA last year and my custodian (TD Ameritrade) filed the 990-T for me. They took about $320 from my IRA to pay the taxes. I didn't have to do anything except they sent me a copy of the filing for my records. I've since moved most of my MLP investments to my taxable account because even though there's more personal tax complexity, at least I don't lose part of my retirement savings to taxes before withdrawal.
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Omar Hassan
•Thanks for sharing your experience! That's really helpful to know. Seems like about 13% went to taxes in your case. I'll definitely check with Vanguard to see if they've already handled this for me. Did TD Ameritrade charge an additional fee for filing the 990-T beyond the actual tax payment?
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Mateo Hernandez
•Yes, they did charge a $49 fee for preparing and filing the 990-T on top of the actual tax payment. So between the taxes and the fee, it definitely cut into my returns. I believe some custodians charge even more, so it's worth checking with Vanguard about their fee structure too.
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Evelyn Xu
I went through a similar situation with CEQP/P in my Roth IRA last year. The key thing to understand is that your $1,318 in dividends likely generated UBTI since CEQP/P is structured as a Master Limited Partnership. The $43 loss from selling shares won't offset the dividend income for UBTI purposes - they're treated separately. Since you're over the $1,000 UBTI threshold, your IRA custodian should have filed Form 990-T and paid taxes directly from your IRA assets. I'd recommend calling Vanguard specifically and asking to speak with someone about "UBTI and 990-T filings" for your IRA account. Regular customer service reps often don't understand these issues, so you might need to ask for a specialist. Also check if Vanguard charges a fee for 990-T filings - many custodians do. This might influence your future investment decisions about holding MLPs in retirement accounts versus taxable accounts.
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Dylan Baskin
•This is really helpful advice! I'm in a very similar situation with CEQP/P in my IRA and had no idea about the UBTI implications until reading this thread. Quick question - when you called about the 990-T filing, did Vanguard proactively send you a copy of the form they filed, or did you have to specifically request it? I want to make sure I have documentation for my records, especially if there were taxes paid from my account that I wasn't aware of.
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