1099-R from correcting excess Roth IRA contribution in 2023 - how to handle on 2024 taxes?
So I messed up in 2023 and put $6500 into my Roth IRA through Vanguard, only to discover later that I made too much money to qualify for Roth contributions. Once I realized my mistake, I contacted Vanguard and had them return the $6500 plus the $900 in earnings back to my checking account before I filed my 2023 tax return using TurboTax. I thought I handled everything correctly at the time. Fast forward to now, and I just received a 1099-R from Vanguard for the 2024 tax year. It shows a gross distribution of $7400.06 and lists a taxable amount of $900.06 with distribution code JP. I'm confused about what to do with this form when filing my 2024 taxes. Do I just input this information from the 1099-R into my tax software? And more importantly, do I need to go back and amend my 2023 return even though I had already taken care of the withdrawal before filing? Any advice would be greatly appreciated! This is my first time dealing with this situation and I want to make sure I'm handling it correctly.
18 comments


Diego Mendoza
This is actually a pretty common situation! When you correct an excess Roth IRA contribution by withdrawing it before the tax filing deadline (plus extensions), you're handling it the right way. The distribution code "JP" on your 1099-R confirms this was a corrective distribution (J = early distribution with no known exception, P = excess contribution plus earnings). For your 2024 taxes, you'll need to report the 1099-R information. The $900.06 in earnings is considered taxable income for 2023 (the year you made the excess contribution), not 2024. However, since you've already filed your 2023 return without including these earnings, you'll need to file an amended return (Form 1040-X) for 2023 to report and pay tax on those earnings. You'll also need to pay a 6% excess contribution penalty on your 2023 return unless you withdrew the excess before the filing deadline (including extensions). Based on your description, it sounds like you did withdraw it in time, so you should be able to avoid this penalty.
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Anastasia Popova
•Wait I'm confused about the timing. If they withdrew the money before filing their 2023 taxes, why would they need to pay the 6% penalty? And if the earnings are taxable in 2023, why is Vanguard sending a 2024 1099-R? Shouldn't that form have been issued for 2023?
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Diego Mendoza
•Good questions! They wouldn't need to pay the 6% penalty if they withdrew both the excess contribution and earnings before their filing deadline (including extensions) - which appears to be what they did. Regarding the 1099-R timing, financial institutions issue these forms based on when the distribution actually occurred, not which tax year the earnings are attributed to. So if they made the withdrawal in early 2024 (but before filing their 2023 return), they'd get a 2024 1099-R, but the earnings would still be attributed to 2023 for tax purposes. It can definitely be confusing!
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Sean Flanagan
After going through something similar last year, I highly recommend checking out https://taxr.ai for this situation. I uploaded my 1099-R with the same JP code and my previous year's return, and their system immediately identified it as an excess contribution correction. It explained exactly what forms I needed to file (including which line items on the 1040-X), calculated the correct tax impact, and even generated a letter explaining the situation to include with my amended return. Saved me hours of research and stress!
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Zara Shah
•Does it actually work with these retirement account issues? I've been trying to figure out a similar situation with a 401k rollover that got messed up and I'm drowning in confusing IRS publications.
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NebulaNomad
•I'm skeptical about these tax services. Does it actually file the amendment for you or just tell you what to do? And how can it know the exact tax impact without knowing your entire tax situation?
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Sean Flanagan
•Yes, it absolutely works with retirement account issues! It analyzes the specific codes on your tax forms and applies the correct IRS rules. For your 401k rollover situation, it would identify the relevant sections of the tax code and explain what steps to take. It doesn't file the amendment for you, but it creates a complete worksheet showing exactly what needs to be changed on each line of your 1040-X, along with supporting documentation. It calculates the tax impact by asking for relevant information from your original return - you don't need to upload your entire return if you're concerned about privacy.
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NebulaNomad
Alright, I finally broke down and tried https://taxr.ai because my situation was basically identical - excess Roth contribution that I corrected but got a 1099-R the next year. I was really surprised by how straightforward the process was. It identified that I needed to file a 1040-X for the contribution year, showed exactly which lines needed updating, and calculated the additional tax I owed on the earnings (plus a small amount of interest since I was past the original filing deadline). The system even flagged that I qualified for an exception to the 10% early distribution penalty that would normally apply to the earnings portion, which my accountant had missed. Ended up saving me about $90 in penalties! Honestly wish I'd known about this earlier instead of spending weeks stressing about it.
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Luca Ferrari
Has anyone else spent HOURS trying to reach the IRS to get clarification on these 1099-R questions? After trying for 3 days straight and never getting through, I used https://claimyr.com and their system got me in the IRS phone queue without the endless redials. You can see how it works at https://youtu.be/_kiP6q8DX5c if you're curious. The IRS agent confirmed that with a JP code, you definitely need to amend the previous year's return to report the earnings, and there's a specific form (Form 5329) you need to include to show you corrected the excess contribution before the deadline to avoid penalties.
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Nia Wilson
•How does that even work? Is it legal? I thought everyone just had to suffer through the IRS hold times like it's some kind of tax filing rite of passage.
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Mateo Martinez
•Sounds too good to be true. Did you actually get to talk to a real IRS agent? What's the catch? Do they listen in on your conversation or something?
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Luca Ferrari
•It works by continuously redialing for you and securing a place in the callback queue! Completely legal - it's essentially just automating what we all try to do manually by redialing repeatedly. And yes, I got to speak with an actual IRS agent who answered all my questions about the 1099-R and excess contribution. There's no catch regarding your privacy - they don't listen in or monitor your call. They just connect you and then drop off the line. I was skeptical too but was desperate after wasting so much time trying to get through.
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Mateo Martinez
I was definitely in the "this can't possibly work" camp, but after another failed morning trying to get through to the IRS about my own Roth correction issue, I tried Claimyr. Got a callback from the IRS in about 90 minutes! The agent walked me through exactly what to do with my situation (which was almost identical to yours - excess contribution I corrected before filing, but received 1099-R the next year). Turns out I definitely needed to amend my previous year's return to report the earnings portion as income, but I didn't need to pay the 6% penalty since I corrected it before the deadline. The agent also explained which forms to include with my amendment to make sure it was processed correctly. Saved me from a potential audit headache down the road!
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Aisha Hussain
Just to add another perspective - I went through this exact scenario last year. The key thing to understand is that even though you're getting a 1099-R in 2024, the earnings portion ($900.06) is technically income for 2023. This is because you're correcting a 2023 contribution. The distribution code "JP" is crucial here. The "J" means early distribution, and the "P" specifically means it was a correction of an excess contribution. This special code tells the IRS that this wasn't just a regular withdrawal, but a corrective action. You definitely need to amend your 2023 return to include those earnings as income. Use Form 1040-X and make sure to include Form 5329 to show you corrected the excess contribution before the deadline to avoid the 6% penalty.
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Ethan Clark
•This seems like way too much work. Would it be easier to just ignore the 1099-R since the taxable amount is relatively small? What's the worst that could happen?
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Aisha Hussain
•I definitely wouldn't recommend ignoring a 1099-R, even for a small amount. The IRS receives a copy of every 1099-R issued, and their automated matching system will almost certainly flag the discrepancy between what was reported to them and what you reported on your return. The worst that could happen is you'd get a CP2000 notice (automated underreporting notice), and then you'd need to pay the tax on the earnings plus interest and possibly penalties for not reporting it correctly. It's much easier to just file the amendment now than deal with IRS notices later. Plus, there's the peace of mind of knowing you've handled everything correctly.
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StarStrider
I had this exact situation last year! The key part is understanding that when you're dealing with correcting excess contributions, you're juggling two different tax years. My advice: 1) For your 2024 return: You'll report the 1099-R distribution, but you'll need to file Form 8606 to properly categorize it as a return of excess contributions. This prevents it from being double-taxed. 2) For your 2023 return: You need to file an amended return (1040-X) to report the $900.06 of earnings as taxable income. You'll also need to file Form 5329 with the amended return to show you removed the excess before the deadline. Honestly, most tax software struggles with this specific scenario, so you might want to consult with a tax professional who specializes in retirement accounts. I know it seems like a lot of work for $900, but getting it right now prevents headaches later!
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Yuki Sato
•Any recommendations for tax software that handles this scenario well? I did mine through FreeTaxUSA last year and I'm not sure they have good support for this situation.
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