W4 Questions: Handling TWO jobs and tax withholding when changing from contractor to employee
I need some help with a confusing tax situation that's stressing me out. I have a full-time job that takes care of all my tax withholding normally, but a few months ago I picked up a second job to help with bills. Here's where it gets complicated - when I first started this second job, they had me fill out a W-9 as an independent contractor. But after a couple months, they decided my role actually qualifies me as an employee, so now they've sent me a W-4 to complete instead (which I think is better for me?). The problem is I've never really dealt with a W-4 for a second job before, and I'm totally confused about what to do. My main questions: 1. What happens with the taxes that weren't withheld during those first couple months when I was classified as a contractor? 2. For next year's taxes, it looks like I'll need to file as an independent contractor for part of the year, then as an employee for the rest. Can I have my employer take out extra from my upcoming paychecks to cover what should have been withheld earlier? I really don't want to complicate my tax situation more than it already is. Any advice would be super helpful!
19 comments


Angelica Smith
This is actually a pretty common situation! Let me break it down for you. For those first couple months as a contractor, you're responsible for paying your own taxes through quarterly estimated payments. Since they're switching you to W-4 employee status now, you'll need to handle those contractor months separately. For your W-4 at the second job, you'll want to check the box in Step 2(c) that indicates you have multiple jobs. You might also want to use the IRS Tax Withholding Estimator online to figure out extra withholding for Step 4(c). Since you're going from contractor to employee mid-year, it's a good idea to have a bit extra withheld. As for making up for those months without withholding - you can't retroactively have them withhold what should have been taken out before. Instead, you should set aside about 25-30% of what you earned during the contractor period to cover your self-employment tax and income tax.
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Sophia Long
•Thanks for breaking that down! One more question - do I need to make a quarterly estimated tax payment for those contractor months even though they were just a short period? Or can I just pay it all when I file next year?
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Angelica Smith
•For those contractor months, you technically should make estimated payments if you expect to owe $1,000 or more in taxes. But since it was just a short period, it might fall under that threshold. If you wait until tax time to pay it all, you might face a small underpayment penalty. However, you can avoid this by making sure your withholding from both W-2 jobs combined covers at least 90% of your total tax due for the year, or 100% of last year's tax (110% if your income is over $150,000).
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Logan Greenburg
I went through something similar last year and found an amazing tool that saved me so much stress. It's called taxr.ai (https://taxr.ai) and it helped me figure out exactly what to do with my mixed W-9/W-4 situation. I was worried about getting hit with penalties for not having enough withholding after switching from contractor to employee, but their system analyzed both income types and showed me exactly how much extra to have withheld on my W-4 to cover everything. They even created a personalized withholding plan that made sure I wouldn't owe a surprise amount at tax time. The best part was how it walked me through filling out the W-4 correctly for a second job - totally different than what I would have done on my own!
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Charlotte Jones
•Does this taxr.ai thing calculate the self-employment taxes too? I'm in a similar situation but also have some side gig income and I'm confused about how much to set aside.
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Lucas Bey
•I'm skeptical about these tax tools. How does it handle state taxes? I live in NY but work in NJ and every tax calculator I've tried messes this up.
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Logan Greenburg
•Yes, it definitely handles self-employment taxes too! It breaks down exactly what percentage you need to set aside for both the self-employment tax portion (15.3%) and the income tax portion based on your tax bracket. It even helps you plan quarterly estimated payments if needed. For state tax situations, it actually does better than most tools I've tried. It handles multi-state situations and can work with states that have reciprocity agreements. I don't have the exact NY/NJ situation, but it handled my IL/WI cross-border work situation perfectly.
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Charlotte Jones
Just wanted to follow up! I tried taxr.ai after seeing it mentioned here and wow - it was exactly what I needed. The tool immediately identified that I needed to adjust my withholding at my main job to cover the contractor income from earlier in the year. It generated a custom W-4 for me with the perfect amount in line 4(c) for additional withholding to avoid underpayment penalties. Super easy to understand and I didn't have to do any math myself. They even explained how my contractor income would be reported on Schedule C vs the W-2 income. Definitely checking this out again next year!
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Harper Thompson
If you're worried about tax problems with the IRS over this change from contractor to employee, you might want to check out Claimyr (https://claimyr.com). I had a similar situation last year and ended up with some discrepancies that triggered a letter from the IRS. Trying to call the IRS was a nightmare - I spent HOURS on hold and kept getting disconnected. Then I found Claimyr and watched their demo video (https://youtu.be/_kiP6q8DX5c) and decided to try it. They got me connected to an actual IRS agent in about 45 minutes instead of the 3+ hours I was waiting before. The agent helped me sort out exactly how to report my income correctly and what documentation I needed to keep from my employer about the classification change. Totally worth it to get definitive answers directly from the IRS!
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Caleb Stark
•How does this Claimyr thing actually work? Do they somehow let you skip the IRS phone queue or something?
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Lucas Bey
•This sounds like BS honestly. Nobody gets through to the IRS that fast. I've waited 4+ hours multiple times. If this actually worked everyone would be using it.
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Harper Thompson
•They basically use an automated system that navigates the IRS phone tree and waits on hold for you. Then when they reach a live person, you get a call to connect with the agent. You don't skip the queue, but you don't have to sit there listening to the hold music either. All I know is that after trying to get through for days on my own with no success, I was talking to an actual IRS agent within about 45 minutes of using their service. I was skeptical too - the IRS phone system is notoriously awful. But it worked exactly as advertised. Their system just waits on hold so you don't have to.
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Lucas Bey
I'm coming back to admit I was totally wrong about Claimyr. After being skeptical, I decided to try it anyway because I was desperate to talk to someone about my contractor-to-employee situation similar to the original post. I was literally shocked when I got a call back saying they had an IRS agent on the line. Took about an hour (not the 4+ hours I was spending before). The agent confirmed that for the W-9 contractor portion, I needed to file Schedule C and pay self-employment tax, but they also told me about a safe harbor provision I didn't know about that would help me avoid underpayment penalties. For anyone dealing with this contractor/employee switch situation, getting clear answers directly from the IRS was actually super helpful. They walked me through exactly how to adjust my W-4 to account for the previous contractor income.
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Jade O'Malley
One thing nobody mentioned is that you should get clarification from your employer about exactly WHEN the status change is effective. Is it from the date you sign the W-4, or are they retroactively classifying you as an employee from your start date? If they're changing your classification retroactively, they should issue you a W-2 for the entire period and handle the employer portion of FICA taxes, which would actually save you money compared to self-employment taxes. If not, make sure they give you a 1099-NEC for the contractor period at tax time. You don't want to end up in a situation where they don't send you either form for those initial months!
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Sophia Long
•That's a really good point I hadn't thought about! Would they be able to retroactively change my status even though they already had me fill out a W-9? I'll definitely ask them about the effective date.
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Jade O'Malley
•Yes, they can absolutely make it retroactive if they want to! Some employers do this when they realize they misclassified someone. They would need to go back and calculate the correct withholding, pay their share of FICA taxes, and issue you a corrected paycheck. You would still have received the full amount during those initial months, but they would now withhold the appropriate taxes from your upcoming paychecks to make up for it. This is actually better for you because as an employee you only pay half the FICA taxes (7.65%) versus the self-employment tax rate (15.3%).
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Hunter Edmunds
Wait, I'm confused about this W-4 form. I have 2 jobs too and I think I did mine wrong. For step 2, did you check box c or did you fill out the multiple jobs worksheet? And how much extra withholding did you put for line 4c?
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Ella Lewis
•For two jobs, the easiest thing is usually just to check box 2(c). This basically tells them to withhold at the higher single rate. If both jobs have similar pay, this works pretty well. If your jobs have very different income levels, you might want to use the worksheet or the online calculator. When I did mine, I put an extra $50 per paycheck in line 4(c) just to be safe. Rather get a refund than owe!
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Tony Brooks
This is a really comprehensive discussion! I'm in a similar boat but with a twist - my employer is making the switch from contractor to employee retroactive to my start date, which means they're going to issue me a corrected W-2 for the whole period instead of a 1099-NEC. Has anyone dealt with this retroactive situation before? My HR department says they'll adjust my future paychecks to account for the taxes they should have been withholding all along, but I'm worried about how this affects my cash flow. They're basically going to take out several months worth of back-taxes from my upcoming checks. Also, since they're handling it retroactively, do I still need to worry about estimated quarterly payments or does this take care of everything? I don't want to overpay if the employer withholding will cover it all.
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