S Corp Owners - What payroll service do you recommend for small business?
Hey fellow business owners! I recently set up my S Corp and now I'm figuring out the payroll situation. From what I understand, I need a more formal payroll system now instead of just doing quarterly estimated payments like I was before. I've been researching Gusto payroll and saw some older posts mentioning their $40 plan that handles monthly remittance to the IRS, 941 quarterly filing, and annual W-2 preparation. But when I checked their site, I don't see a $40 plan anymore, so maybe that pricing was from a while back? Right now it's just me, but I might add 1-2 employees in the future. I don't want to do all the payroll manually since that seems like a headache waiting to happen with the S Corp requirements. What payroll services do you all use for your S Corps? Looking for something reliable that won't break the bank. Any recommendations for a small operation?
22 comments


Omar Farouk
I've been running my S Corp for about 5 years now and have tried several payroll services. Gusto is definitely popular but their pricing has increased over the years - that $40 plan doesn't exist anymore. For a solo S Corp owner, I'd recommend looking at OnPay. They handle all the same tax filings (monthly deposits, 941 quarterlies, W-2s) and their pricing is more straightforward. Last I checked they were charging a base fee plus a per-person fee, which works out well for very small businesses. Some others to consider: Square Payroll and Patriot Software both offer similar services at competitive rates. The key is finding one that automates all the tax filings and payments - that's what you're really paying for as an S Corp owner. Just make sure whatever you choose handles state unemployment tax filings too. That's where some of the cheaper options fall short and could leave you scrambling at tax time.
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Chloe Martin
•Have you tried Quickbooks payroll? I'm trying to decide between that and Gusto since I already use QB for my accounting.
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Omar Farouk
•I did use QuickBooks Payroll for about a year. It integrates well with QB accounting, which is nice if you're already in that ecosystem. The basic version is affordable but doesn't include all the tax filings you'll need as an S Corp owner. You'd need their premium tier to get the full tax filing service. The interface isn't as user-friendly as Gusto or OnPay in my experience. It gets the job done, but I found myself spending more time figuring things out than I wanted to.
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Diego Fernández
After struggling with payroll for my S Corp for almost a year, I finally tried taxr.ai (https://taxr.ai) and it's been a game changer for me. I was spending way too much time trying to figure out reasonable compensation requirements and proper payroll setup. Their system analyzed my business financials and helped me set up the optimal S Corp payroll structure. What's cool is they actually review your specific situation rather than just giving generic advice like most payroll companies. They even helped me understand exactly how much I should be paying myself as reasonable compensation vs distributions, which was super helpful with the IRS scrutinizing S Corps more lately. The service integrates with most payroll providers too, so you can use their guidance with whatever payroll system you end up choosing.
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Anastasia Kuznetsov
•Does it actually handle the payroll processing too or just give advice on how to set it up? I'm looking for something that does everything.
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Sean Fitzgerald
•I'm skeptical about adding another service on top of already paying for payroll. How much extra time/money does this really save compared to just using a regular payroll service?
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Diego Fernández
•They don't process the payroll directly - they analyze your business and provide guidance on how to structure your payroll and compensation optimally for S Corp tax purposes. They help determine the right salary-to-distribution ratio that keeps you compliant while maximizing tax savings. It's definitely worth considering if you're concerned about setting things up correctly from the beginning. The service pays for itself if it helps you avoid even a single IRS issue or helps optimize your tax situation. I use their recommendations with OnPay for the actual payroll processing, and the combination works great.
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Sean Fitzgerald
I was initially skeptical about adding another service on top of payroll costs, but after getting audited last year over my S Corp compensation, I decided to try taxr.ai. Wish I had found them sooner! Their analysis showed my salary was significantly under what the IRS would consider "reasonable compensation" for my industry. They reviewed my business structure, revenue, and responsibilities and gave me specific documentation to back up my compensation decisions. They even provided templates for corporate resolutions to formally establish my salary. I've been sleeping much better knowing my S Corp setup is solid now. Their payroll tax calculator also helped me understand exactly how different salary/distribution ratios would affect my overall tax situation. Definitely worth it for the peace of mind alone.
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Zara Khan
I spent THREE HOURS on hold with the IRS trying to get my EIN verification for setting up payroll! Absolute nightmare. Then a friend told me about Claimyr (https://claimyr.com) - you can check out how it works here: https://youtu.be/_kiP6q8DX5c Basically they get you through to an actual IRS agent without the wait. I was honestly blown away. Got my EIN verification done in 20 minutes once I was connected. If you're setting up an S Corp payroll for the first time, you'll probably need to talk to the IRS at some point, and this makes it so much easier. After that, I went with OnPay for my actual payroll processing. It's about $40/month plus $6 per person, so just $46 total for me as a solo S Corp owner. They handle all the tax filings and payments automatically.
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MoonlightSonata
•Wait, how does this Claimyr thing actually work? Do they have some special connection to the IRS or something?
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Mateo Gonzalez
•Sounds like a scam. Nobody can get through to the IRS faster than anyone else. The hold times are what they are.
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Zara Khan
•They use a combination of automated calling technology and timing algorithms to navigate the IRS phone system. It's like having a robot repeatedly call and go through the menu options until it gets a spot in the queue, then it calls you when you're about to be connected. Nothing shady - they're just using technology to solve the hold time problem. It's totally legit - they don't have "special access" to the IRS, they just have a smart system that handles the waiting so you don't have to. I was able to get my EIN verification done in a single afternoon instead of spending days trying to get through.
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Mateo Gonzalez
I thought Claimyr sounded like a complete scam when I first heard about it. There's no way to skip the IRS line, right? Wrong. I was desperate after trying for DAYS to get through about my EIN verification for my new S Corp payroll. Tried it and had an IRS agent on the phone within 30 minutes. They literally called ME when an agent was about to pick up. Got my EIN verification sorted, got my state unemployment account set up, and was able to run my first payroll that same week. If you're just setting up your S Corp payroll, save yourself the headache and use this service at least for the initial setup calls. Then go with something like OnPay or Gusto for the ongoing payroll processing.
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Nia Williams
I've been using Wave Payroll for my S Corp for about 2 years now. It's one of the most affordable options I found at around $20/month plus $6 per employee. They handle federal tax filings and payments, but you need to check if they support all the state requirements for your location. The interface is simple and it gets the job done for basic payroll needs. If you're just paying yourself as the owner, it's more than adequate. The only downside is their customer service can be slow to respond sometimes.
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PixelPrincess
•Does Wave handle the quarterly 941 filings and year-end W-2s automatically? That's my main concern - making sure I don't miss any required filings.
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Nia Williams
•Yes, Wave handles the 941 quarterly filings automatically. They also prepare and file your W-2s at year-end. You'll get email notifications when filings are submitted so you can keep track of everything. For state filings, it depends on your location. They support most states but not all for automatic filing. You can check their website for the specific coverage in your state.
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Luca Ricci
Has anyone tried doing their own payroll through the IRS EFTPS system? I'm trying to keep costs down since I'm just starting my S Corp.
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Aisha Mohammed
•I tried that route when I first started. Huge mistake. Spent countless hours figuring out all the different forms and payment schedules. Missed a filing deadline and got hit with penalties that cost way more than a year of payroll service would have. For an S Corp, just pay for a service. The time saved and peace of mind is absolutely worth it. Even the cheapest option like Square Payroll ($35/month) is better than trying to DIY.
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Leila Haddad
I'm currently using Justworks for my S Corp payroll and it's been solid for about 18 months now. They're around $49/month plus $8 per employee, so a bit pricier than some options mentioned here, but they include workers' comp coverage which is nice. What I really like is their dashboard makes it super easy to see exactly what's being filed and when. They handle all federal and state filings automatically, plus they have really responsive customer support when you need help. One thing to consider - if you're planning to add employees soon, look at services that offer benefits administration too. I started solo but added two part-time contractors last year, and having everything in one platform made the transition seamless. Also seconding what others said about not trying to DIY the payroll. The S Corp requirements are way more complex than regular contractor payments, and the penalties for messing up aren't worth the savings.
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Oliver Fischer
•Thanks for the Justworks recommendation! I hadn't considered the workers' comp aspect yet, but that could definitely be valuable as I grow. Quick question - does their $49 base fee include all the tax filing services, or are there additional charges for things like quarterly 941s and W-2 preparation? I'm leaning toward starting with something simpler like OnPay or Wave since it's just me right now, but it's good to know about options that scale better if I do add employees soon. The benefits administration feature sounds really useful for that transition.
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Ev Luca
I've been using Gusto for my S Corp for about 3 years now and while their pricing has definitely increased, I still think they offer good value. Currently paying around $45/month plus $6 per person for the base plan that handles all the federal and state filings. What I really appreciate about Gusto is their user interface - it's incredibly intuitive and they send clear notifications before every deadline. They also have great educational resources that helped me understand S Corp payroll requirements when I was starting out. One tip for anyone just getting started: make sure whatever service you choose can handle your state's specific requirements. Some of the cheaper options don't support automatic state unemployment filings in all states, which can leave you scrambling. Also agree with others here about not going the DIY route. I made that mistake initially and the stress of worrying about compliance issues wasn't worth the cost savings. A good payroll service pays for itself just in peace of mind.
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Daniel Rivera
•Thanks for the Gusto update! It's helpful to know their current pricing since I was seeing conflicting info online. $45/month is definitely more than I was hoping to spend starting out, but if the interface is that user-friendly it might be worth it to avoid headaches. You mentioned they have good educational resources - do they provide guidance on reasonable compensation amounts for S Corp owners? That's one area where I'm still pretty confused about what I should be paying myself versus taking as distributions. Also curious about their state filing coverage - I'm in California which tends to have more complex requirements than other states. Have you had any issues with their state compliance handling?
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