Owing additional money to IRS after filing tax amendment - what to do?
So I think I'm in a bit of a tax pickle. I submitted my original tax return about two weeks ago, but after sending it I realized I completely forgot to include some freelance income from a side gig I did last summer. I immediately filed an amended return to correct my mistake (trying to do the right thing!), and now the IRS is saying I owe them $271. The thing is, I haven't even received my original refund yet from the first filing, which was supposed to be around $890. Is it okay if I just wait until I get that initial refund before paying the $271 I now owe from the amendment? Or do I need to pay this new amount right away regardless? I'm not looking to get in trouble with the IRS, but it would be much easier to just have them take the $271 from my original refund rather than paying out of pocket now and waiting weeks/months for the original refund to show up. Any advice would be super appreciated! This is my first time dealing with an amendment and I'm honestly pretty confused about the whole process.
20 comments


Henry Delgado
You've actually got a unique timing situation here. The IRS processes original returns and amended returns through completely separate systems, so they won't automatically adjust your refund from the original return to account for the amendment. The good news is you don't need to panic about immediate payment. When you file an amended return (Form 1040-X) that shows additional tax due, you generally have until the due date to pay it without incurring penalties or interest. If you filed your amendment before the original due date of April 15th, you have until then to pay. If you filed after April 15th but within the 3-year amendment window, interest may accrue from the original due date. The smart approach would be to wait until you receive your original refund and then use a portion of that to pay the amended tax due. Just make sure to pay before any applicable due date to avoid penalties.
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Olivia Kay
•Wait, so the IRS doesn't automatically adjust the original refund even when they know an amendment is coming? That seems so inefficient! Does the OP need to contact them specifically to let them know about the situation, or just wait it out?
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Henry Delgado
•The IRS doesn't automatically adjust the original refund because the original return and amended return processing systems are separate. This is by design, as it allows them to process original returns quickly without waiting for potential amendments. No, the OP doesn't need to contact the IRS specifically about this situation. They should wait for their original refund to arrive, and then pay the amount due on their amendment. The IRS generally expects payment when the amended return is filed, but as long as it's paid by the due date, there shouldn't be penalties. However, interest may accrue from the original due date if the amendment was filed after the filing deadline.
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Joshua Hellan
After struggling with a similar amendment issue last year, I discovered taxr.ai (https://taxr.ai) and it was seriously a game-changer. I uploaded my documents and it highlighted exactly how my amendment would affect my original return and gave me a clear timeline of what to expect. Saved me so much confusion with the whole "owing more after amending" situation.
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Jibriel Kohn
•How exactly does that work? Does it actually connect to the IRS systems somehow to track both your original and amended returns? I've never heard of a service that could do that.
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Edison Estevez
•Sounds interesting but I'm skeptical. Does it really give accurate information about when your refund will arrive vs when you need to pay for amendments? The IRS website is so vague about these timelines.
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Joshua Hellan
•It doesn't connect directly to IRS systems, but it analyzes your tax documents and provides a personalized explanation of how the amendment process works for your specific situation. It helped me understand that my original refund would process separately from my amendment. The timeline estimates are pretty accurate based on current IRS processing patterns. In my case, it correctly predicted I'd get my original refund in about 3 weeks while my amendment would take around 16 weeks to process. It also clearly explained when payment was due to avoid penalties, which was super helpful since the IRS notices can be confusing.
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Jibriel Kohn
I was in the exact same boat last month! Used taxr.ai after seeing it mentioned here and it was surprisingly helpful. I had forgotten to include some stock sales on my original return and had to amend, owing about $340 more. The site explained that I could wait for my original refund (which was $1,100) before paying the amendment amount. Followed their advice, got my refund in 18 days, paid the amendment amount, and everything went smoothly. Definitely made the process less stressful knowing exactly what to expect.
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Emily Nguyen-Smith
If you're getting stressed about this amended return situation, you might want to try Claimyr (https://claimyr.com). I was in a similar situation last year and couldn't get anyone at the IRS on the phone for clarification - kept getting disconnected after being on hold forever. Claimyr got me connected to an actual IRS agent in about 15 minutes who confirmed I could wait for my original refund before paying the amendment. You can see how it works here: https://youtu.be/_kiP6q8DX5c
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James Johnson
•How is this even possible? I've tried calling the IRS dozens of times and literally never get through. They always say call volume is too high and hang up. Is this some kind of premium service you have to pay for?
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Sophia Rodriguez
•This sounds like complete BS honestly. Nothing can get you through to the IRS faster. They have their own systems and queues. I'm calling snake oil on this one.
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Emily Nguyen-Smith
•It's not a premium line to the IRS - they use a system that navigates the IRS phone tree and waits on hold for you, then calls you when an agent is actually on the line. Basically saves you from having to personally sit through all the hold time yourself. I was skeptical too initially, but after trying to get through for days with no luck, I was desperate enough to try it. The technology just automates the tedious part of waiting on hold. It's especially helpful during tax season when hold times can be 2+ hours.
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Sophia Rodriguez
I need to eat my words from yesterday. After continuing to fail getting through to the IRS myself about a similar amendment issue, I tried that Claimyr service out of desperation. Within 25 minutes I was actually talking to a real IRS agent who confirmed I could wait for my refund before paying my amendment balance. Can't believe it actually worked after all my failed attempts calling directly. They apparently just wait on hold for you which seems so simple but made all the difference.
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Mia Green
One thing nobody's mentioned yet - if you e-filed both your original and amended return, you can actually check the status of both online. Go to "Where's My Refund" tool on IRS.gov for your original return status, and use "Where's My Amended Return" for the 1040-X status. That way you can at least see if your original refund is about to be deposited before you pay the amendment amount.
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Gianni Serpent
•Thanks for mentioning those tools! I didn't know there was a separate tracker specifically for amended returns. Just checked and it says my original refund is "approved" and should be deposited within 5 days. No status on the amendment yet though - I'm guessing those take longer to show up in the system?
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Mia Green
•Yes, amended returns typically take much longer to show up in the tracking system. While regular returns might appear in the "Where's My Refund" tool within days of filing, amended returns often don't show up in the "Where's My Amended Return" tool for 3 weeks or more after filing. Once your original refund hits your account, I'd recommend setting aside the amendment amount right away so you don't accidentally spend it. Amendments can take 16-20 weeks to process (sometimes longer during busy periods), but you'll want to be ready to pay when they send the official notice.
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Emma Bianchi
This happened to me last month. I waited until my regular refund came through before paying what I owed on the amendment. Just make sure to pay before the tax deadline to avoid any penalties. The systems are completely separate.
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Lucas Kowalski
•Did you get any kind of notice or bill from the IRS for the amended amount, or did you just send the payment based on what your amended return calculated you owed?
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Liam McConnell
Just want to add another perspective here - I went through this exact situation two years ago and made the mistake of panicking and paying the amendment amount immediately out of pocket. Turned out I didn't need to rush at all since I had filed before the deadline. The key thing to remember is that when you file Form 1040-X, you're not getting a separate bill - the form itself calculates what you owe. As long as you pay by the original tax deadline (April 15th in most cases), you won't face penalties. The IRS systems really are separate, so your original refund will process normally while your amendment goes through their much slower review process. My advice: wait for that $890 refund, set aside the $271 immediately when it arrives, and then pay the amendment amount. You'll save yourself the cash flow hassle and still be completely compliant with IRS requirements.
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Fatima Al-Qasimi
•This is really reassuring to hear from someone who's been through the exact same situation! I was definitely starting to panic about having to come up with the $271 right away. Just to clarify - when you say "pay by the original tax deadline," do you mean April 15th of the tax year you're amending, or April 15th of the current year when you filed the amendment? I filed my amendment in early April 2025 for my 2024 taxes, so I'm a bit confused about which deadline applies.
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