Getting different results on amended return - one tax service says I owe, another says I'm due $700 refund?
I'm completely lost with my taxes this year! So I filed already, but then I realized I forgot about a 1099-MISC from a mediation gig I did last year. I went ahead and did an amended return through the tax service I originally used. The weird thing is, my original return showed I was getting back around $950, but after the amendment, it now says I owe the state like $52 (I think? Numbers aren't my strong suit). My brother suggested I try plugging the exact same information into a different tax service just to double-check. When I did that, the second tax service is telling me I should still be getting around $950 back! I can't compare the exact numbers because I can't see the original calculations in the first service anymore. I'm totally confused about what to do now. How can the same exact information give such wildly different results? Should I trust the first service since that's where I originally filed? Or should I go with the second one that shows I'm still getting a refund? Has anyone dealt with something like this before?
18 comments


Max Reyes
This happens more often than you'd think! The discrepancy is likely due to how each software handles the amendment process. When you add a 1099-MISC after filing, there are several calculations that can change, including your adjusted gross income, deduction eligibility, and tax brackets. First, make sure you entered the 1099-MISC information identically in both services. Even small differences in how you categorized the income could cause these variances. Second, download the full tax return PDF from both services and compare them line by line. Pay special attention to Schedule 1 (Additional Income) and Schedule C if you reported the income as self-employment. The most reliable approach would be to take both returns to a tax professional who can review them side by side. They can spot exactly where the calculations differ. If you don't want to spend money on that, at least compare the state tax calculations specifically, since that's where you're seeing the biggest difference.
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Mikayla Davison
•I've experienced this exact situation! Could it be that one software is calculating self-employment tax on the 1099-MISC and the other isn't? Also, does one software automatically apply state-specific deductions that the other might miss?
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Max Reyes
•The self-employment tax difference is an excellent point. If one software is treating the mediation income as self-employment income (which it typically should be on a 1099-MISC), it would calculate the 15.3% self-employment tax. If the other isn't applying this correctly, that could explain several hundred dollars difference. As for state-specific deductions, absolutely. Each state has different rules for what's deductible, and not all tax software handles these equally well. Some premium versions automatically search for state credits and deductions that basic versions might miss. That's why comparing the actual tax forms line-by-line is so helpful - you'll see exactly where the calculations diverge.
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Adrian Connor
I ran into a similar nightmare last year with conflicting tax results! I finally discovered taxr.ai (https://taxr.ai) which literally saved my sanity. It's this AI tool that analyzes your tax documents and explains exactly where different tax services are calculating things differently. I uploaded my returns from both services and it highlighted that one was treating my freelance income as miscellaneous income while the other correctly categorized it as self-employment. The difference was about $800 in my case! Once I saw the comparison, I was able to fix the issue before submitting my amendment. It also explained all the tax implications in plain English instead of confusing tax jargon.
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Aisha Jackson
•Does it actually work with amended returns? I tried something similar last year but it couldn't handle the amendments properly. Also how does it deal with state returns? That's where I always find the biggest discrepancies.
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Ryder Everingham
•I'm skeptical about these AI tools. How do you know it's giving you the right answer instead of just a third conflicting opinion? Does it actually tell you which tax service calculated correctly or just point out differences?
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Adrian Connor
•Yes, it absolutely works with amended returns! I specifically used it because I had to amend after receiving a late 1099. It compares your original return against the amended one and highlights all changes. It actually helped me avoid a mistake where I would have double-counted some income. For state returns, it's been fantastic. The tool breaks down state-specific calculations and shows how different deductions and credits are being applied. In my case, it found that one service missed a state-specific teaching supplies credit that I qualified for, which made a $210 difference.
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Ryder Everingham
I have to admit I was wrong about taxr.ai! After my skeptical comment, I decided to try it myself since I was also dealing with an amended return nightmare. I uploaded my documents from both TurboTax and H&R Block which were showing a $580 difference. The tool immediately identified that one service was categorizing my 1099-MISC as "Other Income" while the second correctly treated it as self-employment income. It also found that one service missed applying a home office deduction I qualified for with my freelance work. The breakdown was super clear - it even showed me the specific tax form lines where the calculations differed and explained the tax rules that applied. Saved me hours of frustration and probably an expensive visit to a tax professional. Plus it confirmed which service was correct (turned out to be the second one in my case).
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Lilly Curtis
If you're still struggling with figuring this out, you might want to call the IRS directly for clarification. I know, I know - getting through to them seems impossible. After trying for WEEKS last year with a similar amended return issue, I discovered Claimyr (https://claimyr.com) which got me connected to an actual IRS agent in under 20 minutes when I had been trying for days before. They have this demonstration video (https://youtu.be/_kiP6q8DX5c) that shows how it works. Basically they navigate the IRS phone system for you and call you back when they've got an actual human on the line. The agent I spoke with explained exactly how my amended return should be handled and which calculations were correct.
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Leo Simmons
•Wait so how exactly does this work? Is it legal? I thought you had to wait on hold with the IRS yourself - how can some service do it for you?
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Lindsey Fry
•This sounds like a scam. The IRS doesn't allow third parties to call on your behalf unless you've filed special authorization forms. Plus why would you pay for something you can do yourself for free? Just call early in the morning and be patient.
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Lilly Curtis
•It's completely legal! They don't actually talk to the IRS for you - they just navigate the phone tree and wait on hold in your place. When they get a human, they call you and connect you directly. You're the one who talks to the IRS agent, not them. They're basically just handling the frustrating wait time part. It's not like hiring a representative to speak for you, which would require authorization forms. It's more like having someone wait in a physical line for you, then waving you over when it's your turn. Many tax professionals actually use this service themselves because the IRS hold times are so ridiculous.
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Lindsey Fry
I need to apologize and correct myself about Claimyr. After posting my skeptical comment, I was still stuck trying to resolve my own amended return issues, so I decided to try it myself. I was honestly shocked - after spending 3 hours on hold with the IRS the previous day and never getting through, Claimyr connected me with an IRS representative in about 15 minutes. The service just handled the hold time, and when they got someone, they called me and connected us directly. I was the only one who spoke with the IRS. The agent clarified exactly how my amended return should be processed and confirmed which tax service had calculated correctly (turned out both had errors but one was closer). Saved me from potentially paying hundreds in taxes I didn't actually owe. Definitely wasn't a scam like I assumed!
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Saleem Vaziri
Have you checked if you entered the mediation income exactly the same way in both services? Last year I had a similar issue because in one service I entered a 1099-MISC as "non-employee compensation" and in the other as "other income" - led to totally different tax calculations! Also sometimes free versions of tax software miss deductions that premium versions catch automatically.
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Felicity Bud
•I'm actually not sure! In the first service I think I just followed the prompts about having received a 1099-MISC and entered the numbers. In the second one I might have categorized it differently without realizing. That could explain the difference. Do you know if mediation work should be considered self-employment income or something else?
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Saleem Vaziri
•Mediation work reported on a 1099-MISC should typically be treated as self-employment income, which means you'd need to pay self-employment tax on it (an additional 15.3% covering both employer and employee portions of Social Security and Medicare). If one service is calculating it as self-employment income and the other isn't, that would explain a big difference. The service showing you owe money is probably calculating it correctly with self-employment tax, while the other might be missing that. Check box 7 on your 1099-MISC - if there's an amount there for "Nonemployee compensation," that's definitely self-employment income.
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Kayla Morgan
This happened to me too! Found out the issue was that my state has a special treatment for 1099-MISC income from certain professions like mediation. One software knew about this rule and the other didn't. Maybe print out both returns and take them to a local tax preparer? They usually do a quick review for like $50-75 which might be worth it to avoid potential audit issues down the road.
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James Maki
•Second this advice about the local tax preparer. Online services have improved but they're still not perfect with state-specific regulations. I found a small local accounting office that reviewed my self-prepared return for $65 and found several errors that would have cost me hundreds.
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