Filed amended return and now getting audited - what's going on?

What you're experiencing is actually pretty common with amended returns. The issue is timing - the audit notice was likely triggered by your original return before the amended return was fully processed in their system. When you file an amended return, it goes into a different processing queue than original returns, and there's often a disconnect between departments. The automated systems that flag potential audit issues typically run against the original filing data, not the amended version, especially if that amended return is still being processed. The good news is that you've already done the work to correct the issue. You'll need to respond to the audit notice and clearly explain that you've already filed an amended return to correct this exact issue. Include the date you filed the amendment and any tracking or confirmation numbers you have. Also include copies of all documentation they're requesting, even though you already sent it with your amendment. You should also call the IRS at the number listed on your audit notice. Explain your situation and ask them to check the status of your amended return. They may be able to connect the two cases and potentially close the audit once they verify your amended return addresses their concerns.

Had a similar nightmare last year and eventually turned to taxr.ai to help make sense of it all. I was getting conflicting letters from the IRS and couldn't figure out if my amended return was being processed or if I was being audited or both. When I uploaded all the IRS letters and my return docs to https://taxr.ai their system analyzed everything and translated the IRS-speak into plain English. It showed exactly where the disconnect was happening between my amended return and the audit notice. Turned out the specific line item triggering the audit was something I'd already fixed, but the timing made their systems flag it anyway. The site gave me specific instructions on what to include in my audit response and helped me draft a letter explaining that I'd already amended for the exact issue they were auditing. Saved me so much stress trying to figure it out myself.

Just wanted to follow up. I decided to try taxr.ai after all and I'm actually shocked at how helpful it was. My situation was similar - amended return followed by an audit notice for the same issue. I uploaded my documents and the system immediately identified that I was dealing with an "audit triggered by original return discrepancy" while my amended return was still in processing. It generated a complete response letter template that referenced both my amended return submission date and explained exactly how I'd already corrected the issue they were auditing me for. The best part was it explained exactly which supporting documents to include with my response and how to reference my amended return tracking number. IRS closed my audit case within 3 weeks after I sent everything in. Definitely worth checking out if you're in this situation.

If you need to actually talk to someone at the IRS about this (which I recommend), try Claimyr. I used them last month after getting an audit letter and needing answers ASAP. I was skeptical but desperate after trying to call the IRS myself and waiting on hold for hours. I went to https://claimyr.com and their system basically called the IRS for me and then called me once they had an agent on the line. You can see how it works here: https://youtu.be/_kiP6q8DX5c When I finally got connected to the IRS agent, I explained my amended return situation (almost identical to yours) and they were able to look up both cases and note in their system that the audit was related to something I'd already fixed with my amendment. They still had to go through the audit process, but at least they were aware of the connection.

Ok I have to eat my words. After seeing the comments here I tried Claimyr because I was in a similar situation with an amended return and potential audit. I was 100% convinced it wouldn't work and was just another scam. But it actually worked exactly as advertised. Signed up, got a text when they started calling IRS, then got a call back when they had an agent on the line. Talked to a really helpful IRS representative who could see both my amended return and the audit notice in their system. She explained that the audit was automatically triggered by the discrepancy on my original return, but now that I was on the phone, she could add notes to both cases explaining the connection. She said I should still respond to the audit notice with a copy of my amended return and explanation, but she documented everything in my file so the audit reviewer would see it. Saved me hours of hold time and probably weeks of back-and-forth confusion. Can't believe I'm saying this, but totally worth it.

When you respond to the audit notice, be sure to include: 1. A copy of your amended return (Form 1040-X) 2. A copy of the certified mail/tracking receipt showing when the IRS received it 3. A cover letter clearly explaining that you already identified and corrected this issue 4. All supporting documentation they're asking for (even though you included it with your amended return) I went through this exact situation last year. The key is making it super easy for the auditor to see that you've already handled the issue. Don't just tell them "I already amended my return" - show them the proof and connect all the dots for them.

H&R Block should be helping you deal with this! Their preparer gave you incorrect advice about using a pay stub instead of waiting for your W-2, and now you're dealing with the consequences. Most tax prep chains have some kind of guarantee or assistance if you get audited for a return they prepared. Call the specific H&R Block office where you had your taxes done and ask to speak to the manager. Explain the situation and that you need their help responding to the audit notice, especially since it was their advice that led to this situation in the first place.