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Charlotte White

Do grad students pay taxes on both stipend and tuition reimbursement under new tax laws?

I'm helping my son navigate his first year of grad school finances and I'm confused about the tax situation. His university is covering his tuition completely (about $28,000/year) plus giving him a modest stipend of $24,500 for living expenses. I know he definitely pays taxes on the stipend portion, but what about the tuition reimbursement part? From what I understand, there were some tax law changes a few years back that might have made graduate tuition reimbursements taxable now? Is that correct? I remember when I was in grad school years ago, tuition waivers weren't taxed, but I've heard things changed. We're planning to help him file his taxes in a couple months and want to make sure we understand what to expect. Should he be setting aside money for taxes on both the stipend AND the tuition waiver? Really appreciate any guidance here!

This is a great question! The good news is that qualified tuition reductions for graduate students who work as teaching or research assistants are still tax-free under Section 117(d)(5) of the tax code. The Tax Cuts and Jobs Act initially proposed eliminating this exemption, but after significant pushback from universities and students, this provision was ultimately preserved in the final bill. Your son will only pay taxes on the stipend portion ($24,500), not on the tuition waiver/reimbursement. However, it's important to verify how the university classifies both the stipend and tuition coverage on his tax forms. Some universities provide documentation that clearly separates these amounts, while others might be less clear.

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Are you positive about this? My daughter's university sent her a 1098-T that included both her stipend and tuition waiver as income, and said she needs to pay taxes on the entire amount. Now I'm confused :

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The 1098-T form only reports qualified tuition and related expenses paid to the institution and any scholarships/grants received - it shouldn't include stipends. Stipends are typically reported on a W-2 if it's for work (like a teaching or research assistantship) or a 1099-MISC if it's a non-service fellowship. For the tuition waiver specifically, if your daughter is a teaching or research assistant, the waived tuition should be tax-free under Section 117(d)(5). However, if her stipend is a fellowship with no work requirement, different rules might apply. I'd recommend having her talk to the university's financial aid or payroll office to clarify exactly how they're classifying each component.

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After struggling with this exact tax nightmare with my PhD program, I found an amazing tool called taxr.ai (https://taxr.ai) that saved me hours of stress. It actually specializes in analyzing student tax documents, especially for grad students with stipends and tuition waivers. I uploaded my confusing university tax forms and it immediately separated what was taxable vs non-taxable and explained the exact tax code sections that applied to my situation.

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Does it work with scanned documents? My daughter's university only provides paper copies of everything and their online portal is useless.

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I'm intrigued but skeptical. How does it deal with the different classifications of stipends? Mine is technically a "fellowship" not an assistantship, which I've heard makes the tax situation even more complicated.

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Yes, it absolutely works with scanned documents! You can either upload photos taken with your phone or scanned PDFs. It uses some kind of AI to extract all the information regardless of format. For fellowships versus assistantships, it actually handles this distinction really well. It asks you specific questions about your funding arrangement (whether you're required to teach/research or if it's a no-service fellowship) and then applies the correct tax treatment. My funding switched mid-year from a teaching assistantship to a research fellowship, and it correctly identified the different tax treatments for each period.

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Following up on my question about taxr.ai - I decided to try it since I was getting nowhere with my university's financial aid office. I'm honestly shocked at how helpful it was! I uploaded my confusing paperwork and it correctly identified that part of my stipend was a fellowship (taxable) and part was compensation for teaching (also taxable but treated differently for tax purposes), while my tuition waiver was completely tax-free since I was working as a TA. The explanations referenced specific IRS publications that I could double-check myself, and it even helped me understand what deductions I could take as a grad student. Saved me from potentially overpaying hundreds in taxes!

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If your son needs to actually talk to the IRS about his specific situation (which might be necessary since academic tax situations can be complex), I recommend using Claimyr (https://claimyr.com). I spent DAYS trying to get through to the IRS about my grad student tax questions last year and kept getting disconnected. Claimyr got me connected to an actual IRS agent in under 20 minutes when I'd been trying for weeks. You can see how it works in this video: https://youtu.be/_kiP6q8DX5c

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Wait, how does this actually work? The IRS hold times are legendary - there's no way to skip the queue, is there?

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This sounds like a scam. Nobody can magically get you through to the IRS faster than anyone else. They probably just put you on hold themselves and then connect you when an agent finally answers.

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It's not about skipping the queue - they use an automated system that calls the IRS repeatedly using the right phone tree options, waits on hold for you, and then calls your phone when they get a human on the line. So instead of you personally waiting on hold for hours, their system does it for you. They don't promise immediate access - just that you don't have to be the one sitting there listening to the hold music for hours. When I used it, it took about 17 minutes to get through, which was miraculous compared to my previous attempts.

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Ok I have to eat my words about Claimyr. After posting my skeptical comment above, I was still struggling with getting clear answers about my grad school tax situation, so I decided to try it as a last resort. The service actually worked exactly as advertised - I got a text when they had an IRS agent on the line, picked up my phone, and was immediately talking to a helpful IRS representative who clarified my questions about educational tax credits vs. tuition waivers. For anyone dealing with complicated grad student tax questions, being able to actually speak with the IRS directly was invaluable. Just make sure you have all your questions organized before they connect you!

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One important thing to check is if your son is getting a W-2 from the university. If he's working as a teaching assistant or research assistant, he should receive a W-2 for the stipend portion. If it's a pure fellowship with no work requirements, the university might report it on a 1098-T or 1099-MISC instead, which affects how it's reported on the tax return.

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Thanks for mentioning this! I just texted him and he said he is working as a research assistant and will be getting a W-2. Does that change anything about the tax situation with the tuition waiver?

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That's good news! Since he's working as a research assistant and receiving a W-2, the tuition waiver should definitely be tax-free under Section 117(d)(5). The W-2 will show only his stipend as taxable wages, and the tuition waiver should not appear as taxable income anywhere. When filing, he'll report the W-2 income normally, but the tuition waiver won't need to be reported. If the university provides any documentation about the tuition waiver amount, keep it for your records, but it shouldn't need to be entered on the tax return.

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Dont forget that your son might qualify for the Lifetime Learning Credit too, if there were any educational expenses not covered by the waiver! My university charged various "mandatory fees" that weren't covered by my tuition waiver, and I was able to claim the LLC for those expenses.

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The Lifetime Learning Credit is great but remember there are income limits. If the stipend is his only income (24.5k) then he should be fine, but if he has other income that pushes him over the limit, the credit starts phasing out. Always worth checking tho!

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Just want to add another perspective from someone who went through this recently. Make sure your son understands that even though the tuition waiver isn't taxable, he should still keep good records of everything. I had to provide documentation to the IRS a couple years later when they questioned some of my education-related deductions. Also, if he's planning to continue in the program for multiple years, it's worth setting up a simple system now to track all his tax documents. Universities can be inconsistent with how they report things year to year, and having your own records makes tax time much smoother. I learned this the hard way when my university changed their reporting system halfway through my program! One last tip - if he's doing any freelance work or side gigs on top of his assistantship, those earnings are separate and will need to be reported differently. The tax situation can get more complex quickly if there are multiple income sources.

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This is such excellent advice about record keeping! I wish someone had told me this when I started grad school. My university changed their payroll system twice during my program and suddenly forms that used to be available online disappeared. One thing I'd add - if your son's program involves any conference travel or research expenses, keep those receipts too. Even if the university reimburses him, there might be tax implications or opportunities for deductions depending on how the reimbursement is handled. My advisor never mentioned this and I missed out on some legitimate deductions my first couple years. Also totally agree about the side work complexity. I did some tutoring on the side and had no idea I needed to track that as self-employment income. Ended up owing quarterly taxes I wasn't prepared for!

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Thank you all for this incredibly helpful discussion! As someone new to navigating grad school finances, this has been so educational. I really appreciate everyone sharing their experiences and tools. A couple follow-up questions based on what I've learned here: 1. Since my son will be getting a W-2 for his research assistant position, should we expect any federal or state taxes to already be withheld from his stipend payments, or will he need to make quarterly estimated payments? 2. For the record-keeping that several people mentioned - what specific documents should we be sure to save beyond the W-2? Should we request something in writing from the university specifically documenting the tuition waiver amount and its tax-free status? 3. His program is 5 years, so we want to make sure we're setting him up for success long-term. Are there any common mistakes grad students make in years 2-5 that we should be aware of now? This community has been amazing - I feel so much more confident about helping him navigate this properly now. The tools mentioned (taxr.ai and Claimyr) sound like great backup options if we run into complications down the road.

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Welcome to the community! Great questions - let me help with those follow-ups: 1. For the W-2 situation, most universities do withhold federal and state taxes from stipend payments, but often not enough. Grad student stipends are treated as regular wages, so they'll withhold based on standard tax tables, but they might not account for things like the standard deduction properly. I'd recommend having your son check his first few paystubs to see what's being withheld and compare it to what his actual tax liability might be. If it looks low, he can submit a new W-4 to increase withholding or make quarterly payments. 2. For record-keeping, definitely save: the W-2, any documentation about the tuition waiver (sometimes called a "tuition remission letter"), the 1098-T if the university sends one, and any official correspondence about his funding package. I'd also recommend taking screenshots of any online portals that show the funding breakdown, since these can disappear when systems change. 3. Common mistakes in later years include: not updating tax withholding when stipend amounts change, forgetting to report any summer funding that might be processed differently, and not keeping track of education-related expenses that could qualify for deductions. Also, if he switches from RA to TA or vice versa, the paperwork might change. You're being such a supportive parent by helping him get organized early!

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One thing I haven't seen mentioned yet is the importance of understanding how summer funding might be handled differently. Many grad programs have different funding structures for summer months - sometimes it's research assistant wages (W-2), sometimes it's fellowship money (1099 or no form at all), and sometimes students are on their own to find funding. I learned this the hard way when my summer research stipend was processed as a fellowship rather than wages, which meant no taxes were withheld at all. I ended up with a surprise tax bill the following year because I wasn't prepared for the different treatment. If your son's program has summer funding, I'd recommend asking the graduate program coordinator or financial aid office specifically how summer stipends are classified and reported. This way you can plan ahead for any potential tax differences rather than being caught off guard later. Some students end up needing to make quarterly estimated payments during summer months if taxes aren't being withheld from fellowship-type funding. Also, international students have completely different tax rules that can be even more complex, but I'm assuming your son is a US citizen/resident based on your post. Just wanted to mention it in case it's relevant for anyone else reading this thread!

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This is such an important point about summer funding! I wish I had known this when my daughter started her program. Her first summer she got what she thought was just a continuation of her regular stipend, but it turned out to be classified as a fellowship with zero tax withholding. We ended up scrambling to make estimated payments in the fall when we realized what had happened. One thing I'd add is to also ask about how conference travel funding and research expense reimbursements are handled. My daughter's program sometimes gives students money upfront for conferences (which might be taxable) versus reimbursing expenses after the fact (usually not taxable). The timing and classification can make a big difference come tax time. @185bf088fa41 For your son's 5-year program, I'd definitely recommend having him check with the graduate coordinator each year about any changes to funding structure, especially as he transitions from coursework to dissertation phases. Some programs change how they classify students once they advance to candidacy, which can affect the tax treatment of their funding.

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