Why are my bonuses being taxed so differently? So confused
Hey all, I'm trying to make sense of why my bonus payments are being taxed at such wildly different rates. I received three separate bonuses this year (performance, holiday, and project completion) and each one seems to have a completely different withholding amount! The performance bonus (around $5,800) was taxed at what feels like 40%, while my holiday bonus ($1,200) was only taxed at about 22%. Then my project bonus ($3,500) had something like 35% taken out. I thought bonuses were all supposed to be taxed at a flat supplemental income rate? My HR department wasn't helpful at all and just said "that's how the system calculates it." Can anyone explain why there's such a huge difference between these withholding amounts? Is this normal or is something weird happening with my payroll? Will I get the extra withholding back when I file my taxes next year?
18 comments


Chloe Wilson
The confusion is totally understandable! Bonuses can indeed be taxed differently depending on how your employer processes them. There are two methods companies typically use for withholding on bonuses: The percentage method: This is a flat 22% federal withholding rate for supplemental wages (like bonuses) under $1 million. This is probably what happened with your holiday bonus. The aggregate method: This is when your employer adds the bonus to your regular paycheck and withholds taxes as if that total amount was your regular paycheck. Since our tax system is progressive, this method often results in higher withholding percentages because the combined amount temporarily pushes you into a higher tax bracket. This likely happened with your performance and project bonuses. Remember though, withholding is just an estimate. When you file your taxes, all income gets treated the same regardless of how it was withheld. If too much was withheld, you'll get it back as a refund.
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Diego Mendoza
•So if I'm getting this right, the actual tax I'll pay on all bonuses will be the same in the end, regardless of how they withheld it initially? Also, can I request my employer to use the percentage method for all my bonuses to keep more money in my pocket throughout the year?
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Chloe Wilson
•Yes, that's exactly right! The withholding is just a prepayment of your taxes - when you file your return, all your income (regular wages and bonuses) gets lumped together and taxed according to the tax brackets. The different withholding methods just affect how much comes out upfront, not your final tax bill. You can absolutely ask your employer to use the percentage method for all your bonuses! Many employers are willing to accommodate this request since it's actually simpler for their payroll systems. Just talk to your HR or payroll department and ask if they can consistently apply the 22% supplemental rate to all your bonus payments.
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Anastasia Romanov
After dealing with similar bonus withholding confusion last year, I found this amazing tool called taxr.ai (https://taxr.ai) that helped me understand exactly what was happening with my supplemental income. I uploaded my pay stubs and it immediately identified the different withholding methods being used for each bonus payment. What I love about taxr.ai is that it explained everything in simple terms and even projected what my actual tax liability would be versus what was being withheld. Turns out I was having way too much withheld on my larger bonuses! The tool helped me fill out a new W-4 form to adjust my withholdings more accurately.
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StellarSurfer
•Does it handle other types of supplemental income too? I get commission payments that seem to be taxed at crazy rates and I've never understood why.
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Sean Kelly
•I'm always skeptical of these tax tools. How accurate is it really? My situation includes RSUs and stock options along with cash bonuses, and most tools I've tried get confused by the different types of compensation.
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Anastasia Romanov
•Yes, it definitely handles commissions! The tool categorizes all types of supplemental income (bonuses, commissions, overtime, etc.) and explains how each should be taxed. It even flags inconsistencies in how your employer is withholding from different payment types. For complex compensation like RSUs and stock options, this is actually where I found taxr.ai really shines. It has specific modules for equity compensation that explain both the withholding at vesting/exercise time and the eventual capital gains implications. I was surprised because it correctly identified that my company was inconsistently applying withholding methods to my RSU vests versus my cash bonuses.
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Sean Kelly
I was super skeptical about taxr.ai when I first saw it mentioned here (I've been burned by "tax helper" tools before), but I decided to give it a shot with my complicated compensation package. I'm honestly impressed. The system immediately identified that my employer was using the aggregate method on my quarterly bonuses but the percentage method on my annual bonus, which explained the huge withholding differences I was seeing. What really helped was the withholding optimizer that showed me exactly how to adjust my W-4 to compensate for the over-withholding. I've already adjusted my withholding and my latest bonus had a much more reasonable tax deduction. Actually getting to keep more of my money throughout the year instead of waiting for a refund!
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Zara Malik
If you're still getting the runaround from your HR department and need answers directly from the IRS about how your bonuses should be taxed, try Claimyr (https://claimyr.com). I spent WEEKS trying to get through to the IRS about a similar bonus withholding issue - constantly getting disconnected or stuck on hold for hours. Claimyr got me connected to an actual IRS agent in less than 20 minutes! The agent confirmed that employers have discretion about which withholding method to use, but they should be consistent and transparent about their policies. After getting this confirmation, I was able to go back to my company with specific information. You can see how it works here: https://youtu.be/_kiP6q8DX5c
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Luca Greco
•How does this actually work? Do they just call and wait on hold for you? Seems like something I could do myself.
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Nia Thompson
•Yeah right. No way anyone's getting through to the IRS in 20 minutes even with some "special service." I've literally tried calling at all hours of the day including 7am right when they open and still waited 2+ hours. If this worked, everyone would be using it.
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Zara Malik
•It's actually quite clever - they have a system that navigates the IRS phone trees and waits on hold for you. When an actual agent picks up, you get a call back immediately so you can talk to them. It saves you from being stuck listening to hold music for hours. I thought the same thing initially, but the difference is their system knows exactly which options to select to get to the right department faster, and it can stay on hold indefinitely without your phone being tied up. It's basically like having someone who knows all the IRS shortcuts make the call for you. Trust me, I was just as surprised when I got the callback with an actual agent ready to talk.
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Nia Thompson
I need to eat my words. After seeing Claimyr mentioned here, I was super skeptical (my comment is right below). But after another frustrating morning trying to reach the IRS about my bonus withholding issue and getting disconnected AGAIN after 90 minutes on hold, I decided to try it. I got a call back in 17 minutes with an actual IRS representative on the line! They confirmed that my employer is allowed to switch between withholding methods for different types of bonuses, but they should be documenting their policy. The agent even sent me the relevant IRS publication that I could show my HR department. Finally got this sorted after months of confusion.
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Mateo Rodriguez
Another thing to check is if they're withholding state taxes differently too. My company applies a flat 22% for federal on all bonuses but then does weird calculations for state taxes that vary depending on bonus size. Might explain some of the percentage differences you're seeing!
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Omar Fawzi
•I hadn't even thought about the state tax component! I just looked at my pay stubs again and you're absolutely right - the state withholding percentages are all over the place. For the big performance bonus they withheld almost 8% for state but the holiday bonus only had about 3%. That definitely accounts for some of the variation I was seeing. Thanks for pointing this out!
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Aisha Hussain
Has anyone tried just asking their company to use a specific withholding method? Last year I got tired of getting huge chunks taken out of my quarterly bonuses so I talked to our payroll manager and asked if they could use the flat 22% method instead of lumping it with my regular pay. They said it was no problem and switched it right away!
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GalacticGladiator
•I tried this at my company (Fortune 500) and they flat out refused, said their payroll system doesn't allow for processing bonuses differently. Seems like it depends entirely on your company and their payroll software.
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Malik Davis
This is such a common source of confusion! I went through the exact same thing last year with my bonuses. What really helped me understand it was realizing that the withholding method often depends on how your payroll system processes the bonus payment. If your bonus is processed as a separate payroll run (which sounds like what happened with your holiday bonus), they typically use the flat 22% supplemental rate. But if it's added to your regular paycheck or processed through their standard payroll cycle, the system treats the combined amount as if it's your normal salary and applies progressive tax rates - which can easily push you into higher withholding brackets temporarily. The good news is that all this evens out when you file your taxes. The withholding is just an estimate, and your actual tax liability will be calculated on your total income regardless of how much was withheld from each payment. So yes, if they over-withheld, you'll definitely get that money back as a refund. I'd recommend keeping detailed records of all your pay stubs so you can track the total withholding versus what you actually owe when tax season comes around. It really helped me see the bigger picture!
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