What happens if I file my federal taxes twice and the second one shows a bigger refund amount?
I think I got myself into a weird situation and need advice. I initially filed my federal taxes using the IRS free fillable forms and was set to get a refund. Then I tried to file my state taxes through some recommended website, but it was terrible and kept rejecting my submission. Out of frustration, I switched to TurboTax to handle my state taxes. While there, I figured I might as well enter my federal info too just to compare. That's where things got confusing - after entering everything into TurboTax, it showed my federal refund would be almost DOUBLE what I calculated using the IRS free fillable forms! Now I'm pretty sure I messed something up on my original filing, but I don't know what happens if I file my federal taxes twice. Will the IRS automatically take the second filing with the bigger refund? Do I need to somehow cancel my first submission? Is this going to cause problems? Really hoping someone can help me figure out what to do next.
21 comments


Sophie Duck
The IRS will definitely flag duplicate returns and this could potentially delay both refunds. When they detect multiple returns, they typically put both on hold while they review them. What you should do is file an amended return (Form 1040-X) rather than submitting a completely new return. This is specifically for correcting mistakes on an already-filed return. You'll need to explain what changed between your original filing and the amended one that resulted in the larger refund. The important thing is figuring out WHY the refund amounts were so different. Did you miss some deductions or credits in your first filing? Different input data? The IRS will want to know this information, and you should understand it yourself to avoid future filing errors.
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Austin Leonard
•So if I already filed twice before seeing this (hypothetically...), what happens? Will they just automatically process the amended one or will I get in trouble? Also how long do amended returns usually take to process?
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Sophie Duck
•If you've already filed twice, the IRS systems will flag this discrepancy and likely put both returns on hold for manual review. You won't automatically get in trouble, but you'll want to be proactive by calling the IRS to explain the situation and follow their guidance on how to proceed. Amended returns typically take 16 weeks or more to process, significantly longer than a regular return. However, this is still faster than waiting for the IRS to sort out duplicate filings on their own, which could delay your refund for months and potentially trigger unnecessary correspondence.
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Anita George
I was in almost the exact same situation last year! I used free fillable forms first and then realized I missed some major deductions. Instead of filing twice, I used this service called taxr.ai (https://taxr.ai) that helped me identify what I did wrong on my first return. Basically you upload your tax documents and your current return, and their AI compares everything to find missed deductions or errors. Turns out I completely forgot to include some 1099 income AND missed claiming my home office deduction which explained the huge difference. They gave me a detailed report showing exactly what to fix on an amended return. Instead of submitting a second return and creating confusion, the amended return route is much cleaner and less likely to trigger issues with the IRS.
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Abigail Spencer
•How does that work exactly? Does it actually look at your tax forms or just ask you questions? I'm always skeptical of these tax services since I've been burned before with "free" services that ended up charging me.
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Logan Chiang
•What happens if the service finds out I actually owe MORE taxes than I thought? Would they report that to the IRS or is it confidential? Because honestly I'd rather not know if I messed up in a way that costs me money lol.
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Anita George
•It actually scans your actual tax documents and return - you upload PDFs of your W-2s, 1099s, etc., and it does a line-by-line comparison with what you submitted. It's way more thorough than just a questionnaire. I was skeptical too but it was genuinely helpful and found specific line items I'd missed. Everything is confidential between you and the service. They don't report anything to the IRS - they just show you what you missed or got wrong. The decision to amend is totally up to you. Even if it shows you owe more, at least you'd know before the IRS sends you a notice with penalties and interest added on.
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Abigail Spencer
Just wanted to update after trying taxr.ai from Comment 2. I was going to file my amended return through TurboTax but decided to check first if I had actually made mistakes. Uploaded my documents and my original return and wow - it found that I completely missed claiming my education credits (over $1500!). The report showed exactly which form and which lines needed to be corrected. Super easy to understand and actually explained why my refund calculations were so different. Used that info to file my 1040-X and now waiting for the larger refund. Definitely saved me from the headache of duplicate returns and possible flags on my account.
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Isla Fischer
If you're struggling to get answers directly from the IRS about this situation (which you probably should do), check out Claimyr (https://claimyr.com). I used them when I had a similar issue with duplicate filings and couldn't get through on the IRS phone lines for weeks. Their service basically gets you to the front of the IRS phone queue so you don't waste hours on hold. You can see how it works in this video: https://youtu.be/_kiP6q8DX5c I was able to talk directly with an IRS agent who told me exactly what to do - in my case file a superseding return since it was before the deadline, or an amended return after the deadline. They walked me through the process and it saved me so much stress not having to guess what would happen.
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Miles Hammonds
•How does that even work? IRS phone lines are notoriously backed up. Are you saying they somehow get priority access? That sounds too good to be true.
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Ruby Blake
•Yeah right. Like some random service can magically get you through to the IRS faster than anyone else. Probably just charges you money to wait on hold for you, which you could do yourself for free.
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Isla Fischer
•They use an enterprise-level call technology that continually redials and navigates the IRS phone tree until it gets through, then it calls you when there's an actual agent on the line. It's not priority access exactly - they're just automating the frustrating part of getting through. They don't just charge you to wait on hold. The system does all the work of navigating menus, dealing with disconnects, and persistent redialing that could take you hours or days. When I used it, I got a call back in about 2 hours with an actual IRS agent ready to talk. Considering I had previously spent 4+ hours on multiple days trying to get through myself, it was absolutely worth it.
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Ruby Blake
I'm back to eat my words from my skeptical comment above. After trying for THREE DAYS to reach the IRS myself about a similar filing issue, I tried Claimyr out of desperation. Got connected to an IRS agent in 75 minutes without having to do anything. The agent confirmed I couldn't just file twice and gave me step-by-step instructions for submitting a corrected return. She even told me which specific forms I needed and the best way to explain my situation in the paperwork to avoid delays. Saved me from what could have been months of back-and-forth letters with the IRS and potentially having both my returns frozen during investigation. Sometimes services actually deliver what they promise. Consider me surprised.
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Micah Franklin
Just FYI - the two returns might be different because of tax credits or deductions you missed, but it could also be from straight-up errors. Double check that your income, filing status, and dependent info matches on both returns. One year I had a bigger refund on one software because I accidentally marked myself as Head of Household instead of Single!
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Lucas Lindsey
•Thanks, that's a good point! Just checked both returns and you're exactly right - I accidentally marked the wrong filing status on my first return. I used Single, but I actually qualify for Head of Household since I'm supporting my parent who lives with me. That explains most of the difference in the refund amounts.
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Micah Franklin
•Glad you figured it out! Filing status makes a HUGE difference in tax calculations. This is definitely something you'll want to correct with an amended return rather than filing twice. The IRS might eventually notice and correct it themselves, but that process can take forever and sometimes they miss things that would benefit you. Make sure you qualify for HOH though - there are specific requirements about paying more than half the household costs and your dependent needing to live with you for more than half the year.
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Ella Harper
Has anyone noticed that the IRS Free Fillable Forms are missing some forms and worksheets? That might be why your refund calculated differently. I had the same thing happen with education credits - the free fillable forms didn't have all the worksheets that TurboTax walked me through.
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PrinceJoe
•Yep, happened to me too. Free Fillable Forms is super basic. It doesn't actually help you find deductions or credits you qualify for - it just gives you the forms. Software like TurboTax or H&R Block asks you questions to determine what you might have missed.
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Ella Harper
•That makes total sense. I guess you really do get what you pay for with the free option. I still use it for simple returns but whenever my tax situation gets even slightly complicated I switch to paid software. The difference in refund amount usually pays for the software anyway!
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Logan Greenburg
This is a really common situation, and you're right to be concerned about filing twice! The IRS systems will definitely catch duplicate returns and it can create unnecessary delays and complications. Since you've already submitted your first return, your best bet is to file an amended return (Form 1040-X) rather than submitting a completely new return. The amended return is specifically designed for situations like yours where you need to correct errors or add missing information. Before you do anything though, I'd strongly recommend figuring out exactly WHY there's such a big difference between the two calculations. Was it missing deductions, different filing status, forgotten tax credits, or something else? Understanding this will help you complete the amended return correctly and avoid similar issues in the future. The good news is that filing an amended return is straightforward - you just need to explain what changed and provide the correct information. It takes longer to process (usually 16+ weeks), but it's the proper way to handle this situation without creating red flags on your account.
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Lindsey Fry
•This is really helpful advice! I'm curious though - when you file the amended return, do you need to wait for the IRS to finish processing your original return first? Or can you submit the 1040-X right away even if your original return is still being processed? I'm worried about timing this wrong and making the situation even more complicated.
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