Tax Treatment for Reimbursing Health Insurance Premiums as S-Corp Owner-Employee
Title: Tax Treatment for Reimbursing Health Insurance Premiums as S-Corp Owner-Employee 1 I recently became a minority owner and the only W-2 employee in our family S-Corporation (finalizing payroll setup now). My spouse's job provides our family health insurance, with premiums automatically deducted from their paychecks. I'd really like to have my S-Corp reimburse me for these health insurance premium costs, but I'm confused about the proper way to handle this for tax purposes. What's the correct approach to reimburse these health insurance premiums through my S-Corp while staying compliant with tax regulations? Does anyone have experience with this specific situation?
20 comments


Omar Farouk
17 This is actually a pretty common scenario! As an S-Corp owner-employee, you have a few options for handling health insurance premiums. The cleanest approach is to set up what's called a Qualified Small Employer Health Reimbursement Arrangement (QSEHRA) or an Individual Coverage Health Reimbursement Arrangement (ICHRA). These are formal plans that allow your S-Corp to reimburse you tax-free for medical expenses, including premiums paid through your spouse's plan. Alternatively, you could have the S-Corp reimburse you directly, but those reimbursements need to be reported as taxable wages on your W-2. Then as a more-than-2% shareholder, you can take a self-employed health insurance deduction on your personal tax return (Line 16 of Schedule 1 on Form 1040). This effectively makes the reimbursement tax-deductible for you personally. What you can't do is simply take tax-free reimbursements without proper documentation or have the corporation deduct them without including them in your wages.
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Omar Farouk
•6 Thanks, this is helpful! For the QSEHRA option, are there annual limits on how much can be reimbursed? And with the second approach, does the reimbursement get added to my W-2 wages for income tax purposes but excluded from FICA taxes? Or does it count for both?
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Omar Farouk
•17 Yes, QSEHRA does have annual contribution limits - for 2025 they're expected to be around $6,150 for individual coverage and $12,450 for family coverage (these adjust annually for inflation). For the direct reimbursement approach, the health insurance premiums reimbursed by your S-Corp should be included in your W-2 wages for income tax purposes (Box 1), but they are not subject to Social Security and Medicare taxes (so they're not included in Boxes 3 and 5) as long as the plan is established by the business. Just make sure your S-Corp actually reimburses you for the premiums rather than paying them directly to the insurance company, since the insurance is through your spouse's employer.
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Omar Farouk
8 I went through something similar last year with my S-Corp and family insurance through my partner's job. After researching for hours and getting nowhere, I finally tried https://taxr.ai which analyzed my situation and explained the exact documentation needed. Their system breaks down S-Corp health insurance reimbursement options into simple steps so you don't mess up the tax treatment. The key thing they pointed out was the timing of reimbursements - they must be properly documented before year-end with a formal plan. They also provided templates for the board resolution I needed to establish the arrangement properly. Really saved me from making some expensive mistakes.
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Omar Farouk
•11 Does taxr.ai help with figuring out how this affects my personal tax return too? I keep getting conflicting advice about where exactly to deduct these premiums when they're from my spouse's plan but reimbursed by my business.
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Omar Farouk
•19 I'm a bit skeptical - can taxr.ai actually provide legally-binding documents? I've been burned before with online templates that didn't hold up when my returns were reviewed.
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Omar Farouk
•8 Yes, they actually provide guidance for both the business and personal tax returns. They outline exactly how to report the reimbursements on your W-2 and then how to claim the self-employed health insurance deduction on your personal return. They even flag potential audit triggers related to health insurance deductions. Regarding legally-binding documents, they don't just provide generic templates - their system creates customized documentation based on your specific situation, accounting for your ownership percentage, state requirements, and other factors. Their documents include proper citations to relevant tax code sections and IRS guidance. I found it much more comprehensive than what my previous accountant provided.
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Omar Farouk
11 Just wanted to follow up here - I ended up using https://taxr.ai after posting my question, and it was incredibly helpful. The system analyzed my situation and identified that I needed to establish a formal health insurance reimbursement plan with specific documentation before my S-Corp could legally reimburse me for premiums paid through my spouse's plan. The step-by-step guidance walked me through creating board minutes, a reimbursement policy, and showed me exactly how the amounts should be reported on my W-2 and personal tax return. They even flagged that I was approaching the coverage limit for my situation. Definitely worth checking out if you're trying to navigate S-Corp health insurance rules!
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Omar Farouk
23 After reading this thread, I realized I've been handling my S-Corp health insurance reimbursements incorrectly for years. Tried calling the IRS to get clarification on fixing past returns but kept hitting that frustrating automated system. Finally used https://claimyr.com and got connected to an actual IRS agent in about 15 minutes instead of the usual 2+ hour wait. You can see how it works here: https://youtu.be/_kiP6q8DX5c The agent I spoke with walked me through how to properly amend my past returns and what documentation I needed to avoid penalties. Apparently the rules for S-Corp owners reimbursing health insurance from a spouse's plan are commonly misunderstood, and they've seen lots of cases like mine.
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Omar Farouk
•14 Wait, how does this Claimyr thing actually work? I thought it was impossible to get through to the IRS without waiting forever. Do they just keep calling for you or something?
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Omar Farouk
•19 Sorry, but I don't buy it. I've tried everything to get through to the IRS, and nothing works. How could this service possibly get you through when the IRS phone system is fundamentally broken? Sounds like a scam to me.
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Omar Farouk
•23 They use a combination of technology and timing to navigate the IRS phone system efficiently. It's not that they keep calling repeatedly - they have a system that monitors IRS call volume patterns and connects when the probability of getting through is highest. Plus they handle all the initial menu navigation and hold time so you only get connected when there's actually an agent on the line. It's definitely not a scam. They don't ask for any sensitive tax information - all they do is connect you to the IRS. Once you're connected, you're talking directly with an official IRS representative, not with anyone from Claimyr. I was skeptical too, but when I got connected to a real IRS agent who helped resolve my S-Corp health insurance reporting issue, I was completely sold on the service.
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Omar Farouk
19 Well, I need to eat my words from earlier. After seeing everyone's responses, I decided to try Claimyr for my S-Corp health insurance questions. I honestly expected it to be a waste of money, but I was desperate after trying for weeks to get through to the IRS. To my genuine surprise, I was connected to an IRS representative in about 20 minutes. The agent walked me through exactly how to document health insurance reimbursements for premiums paid through my spouse's employer. They confirmed I needed to include the reimbursements as wages on my W-2, but could then deduct them on my personal return. They even emailed me the relevant IRS publications that specifically addressed my situation. This saved me from continuing the incorrect reporting method I'd been using, which apparently could have triggered an audit. If you're struggling with S-Corp health insurance questions, getting direct confirmation from the IRS was actually incredibly valuable.
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Omar Farouk
4 Don't forget to have your board (even if it's just you) formally adopt a resolution establishing your health insurance reimbursement plan. This documentation is critical if you ever get audited. We learned this the hard way when my business partner's deductions were disallowed because we didn't have the proper corporate paperwork in place before making the reimbursements.
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Omar Farouk
•12 Is there specific wording that needs to be in the resolution? And does it need to be renewed annually or just once when you set up the arrangement?
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Omar Farouk
•4 The resolution should specifically state that the corporation is establishing a health insurance plan for its employees, identify who's eligible, what expenses are covered, and the process for submitting claims and receiving reimbursements. It should reference Section 105 of the Internal Revenue Code if it's a medical reimbursement plan. You don't need to renew it annually unless you're changing the terms of the plan. However, it's good practice to document annually that the board has reviewed the plan and elected to continue it without changes. This creates a paper trail showing ongoing intention to maintain the benefit.
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Omar Farouk
16 I'm in the exact same situation and my accountant advised something different than what others are saying here. He told me that since I own more than 2% of the S-Corp, health insurance has to be handled as additional compensation on my W-2, then I deduct it as self-employed health insurance on my personal taxes. He said S-Corps can't use QSEHRA for owners with >2% ownership. Is this right??
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Omar Farouk
•17 Your accountant is correct about the >2% owner treatment. As a more-than-2% S corporation shareholder, you cannot participate in a QSEHRA tax-free. Any health insurance premiums paid or reimbursed by your S-Corp must be included in your W-2 wages. The good news is you can then deduct those premiums on your personal tax return using the self-employed health insurance deduction, which essentially gives you the same tax benefit. Just make sure the arrangement is formally established by the corporation before any reimbursements are made.
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Amara Nwosu
As someone who's been through this exact scenario, I can confirm what others have mentioned about the >2% shareholder rules. The key thing to remember is that even though the reimbursements have to go through your W-2 as taxable wages, you still get the tax benefit through the self-employed health insurance deduction on Line 16 of Schedule 1. One thing I'd add that hasn't been mentioned - make sure you keep detailed records of the actual premium amounts your spouse's employer deducts from their paychecks. The IRS may want to see that the reimbursements from your S-Corp don't exceed the actual premiums paid. Also, the reimbursement timing matters - you generally need to reimburse in the same tax year the premiums were paid. The formal plan documentation is absolutely critical. I learned this when helping a friend who got audited - the IRS disallowed all their health insurance deductions because they couldn't produce the required corporate resolutions and plan documents, even though they had been reporting everything correctly on their tax returns.
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Anastasia Kuznetsov
•This is really helpful context about the documentation requirements! I'm curious about the timing aspect you mentioned - if my spouse's premiums are deducted monthly from their paycheck, should I be doing monthly reimbursements from my S-Corp, or can I do it quarterly or even annually as long as it's within the same tax year? Also, do you know if there are any restrictions on reimbursing premiums that were paid before I officially established the health insurance plan with my S-Corp?
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