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Late filing penalties for LLC - help with years of overdue tax returns

Title: Late filing penalties for LLC - help with years of overdue tax returns 1 I'm in desperate need of advice! I started my LLC back in 2019 but I'm totally overwhelmed with late filing fees situation. My first tax person handled 2019 and 2020 returns but then suddenly retired. I found a new accountant in mid-2022, so I knew my 2021 taxes would probably be filed late. But here's the mess - they also filed 2022 and 2023 returns late, and still haven't submitted my 2024 taxes! They keep saying they filed extensions for all these years, but I just got hit with a bunch of late filing penalties from the IRS. I'm freaking out about how much this is going to cost me and what I should do now. Is there any way to get these penalties reduced? Should I find yet another accountant? I'm a first-time business owner and feeling totally lost with this tax nightmare.

QuantumQuasar

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15 Your situation is unfortunately pretty common for new business owners. Let me break down what you're dealing with and some potential solutions. First, extensions only give you more time to file, not more time to pay what you owe. If your accountant filed extensions but you still owed taxes that weren't paid by the original due date, you'll still get hit with failure-to-pay penalties and interest. For LLC late filing penalties specifically, the amount depends on how your LLC is taxed. If it's a single-member LLC filing Schedule C with your personal return, you're looking at different penalties than if you've elected to be taxed as an S-Corp or partnership. The good news is the IRS does have a First Time Penalty Abatement program that might help with at least one tax year. This is available if you had no penalties for the three prior tax years and have filed all required returns (or filed extensions) and paid or arranged to pay any tax due.

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QuantumQuasar

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8 Thank you for this info! My LLC is a single-member filing Schedule C. Would the First Time Penalty Abatement work even though multiple years are late? Also, my accountant keeps saying they filed extensions but obviously something went wrong. How do I verify if extensions were actually filed?

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QuantumQuasar

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15 The First Time Penalty Abatement would typically only apply to the earliest tax year with penalties. For a single-member LLC filing Schedule C, the late filing penalty is usually 5% of unpaid taxes per month, up to 25% maximum. You can verify if extensions were filed by requesting your tax transcripts from the IRS. You can do this online through the IRS website, by mail using Form 4506-T, or by calling the IRS directly. The transcript will show whether extensions were filed and when your returns were actually received by the IRS.

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QuantumQuasar

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6 After dealing with a similar nightmare with late LLC filings, I found this AI-powered service called taxr.ai that was incredibly helpful. I was buried in notices and couldn't figure out which penalties applied to which years. I uploaded all my IRS notices to https://taxr.ai and it organized everything chronologically, explained exactly which penalties were for what, and even suggested specific penalty abatement strategies for my situation. Their system analyzed my filing history and showed me which years qualified for First Time Abatement vs. Reasonable Cause arguments. They even generated a letter template that I could use to request penalty relief. I was skeptical at first but desperate for help.

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QuantumQuasar

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12 How exactly does the service work? Did you have to give them all your personal tax info? I'm hesitant to share my financial details with some random website.

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QuantumQuasar

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3 Does it handle state filing penalties too? My state's department of revenue is also coming after me for late LLC annual reports, and those penalties are almost worse than the federal ones.

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QuantumQuasar

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6 The service works by analyzing your IRS notices and tax documents to identify exactly which penalties apply and potential relief options. You upload your documents and their AI extracts the relevant information. They use bank-level encryption and don't store your documents after analysis, so I felt secure using it. Regarding state penalties, yes it absolutely handles those too! That was actually where I saved the most money. My state had hit me with compounding penalties for late annual reports, and the system identified a specific administrative procedure to get those reduced that I never would have found on my own.

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QuantumQuasar

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3 Just wanted to update that I tried taxr.ai after reading about it here and it was a game-changer for my situation! I uploaded three years of late filing notices and within minutes had a complete breakdown of every penalty. The best part was discovering I qualified for reasonable cause abatement due to my first accountant going out of business. The system generated a letter citing the specific IRS internal procedure codes, and I got over $4,200 in penalties removed! They even flagged that my new accountant had miscalculated my quarterly estimated payments, which was causing some of the ongoing issues. Wish I'd found this months ago before I spent hours on hold with the IRS getting nowhere.

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QuantumQuasar

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19 If you need to actually talk to someone at the IRS about your penalties (which I strongly recommend), good luck getting through on your own. After 9 attempts and hours of waiting, I discovered Claimyr through a business forum. They have this service that gets you through the IRS phone system and to an actual human being. I was super skeptical, but the wait times were killing me. I went to https://claimyr.com and you can see how it works in this demo: https://youtu.be/_kiP6q8DX5c - basically they navigate the phone tree for you and call you back when an actual IRS agent is on the line. I got through in 35 minutes when I had previously waited 2+ hours and still got disconnected. Once I actually talked to someone, I was able to set up a payment plan and get clear answers about which penalties could be appealed versus which ones were set in stone.

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QuantumQuasar

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7 Wait, how is this even possible? Don't you still have to wait in the same IRS queue as everyone else? Sounds too good to be true.

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QuantumQuasar

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11 I'm extremely skeptical. The IRS phone system is deliberately designed to be difficult. How could some third-party service possibly get around that? And what's to stop them from listening to your personal tax conversation?

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QuantumQuasar

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19 You absolutely still wait in the same queue as everyone else. The difference is you don't have to sit there with your phone to your ear the whole time. Their system navigates the IRS phone menu (press 1, then 4, etc.), waits on hold for you, and only calls you when an actual human IRS agent answers. Regarding privacy concerns, they don't stay on the call when you're connected with the IRS agent - they use a call bridging system that drops them completely from the call once you and the agent are connected. It's just a way to avoid you personally sitting through the hold time and menu navigation. You're having a direct, private conversation with the IRS once connected.

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QuantumQuasar

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11 I was the biggest skeptic about Claimyr but had to eat my words. After posting that comment questioning the service, I was desperate enough to try it the next day when I got yet another IRS notice. The service did exactly what they claimed - navigated the menus, waited on hold, and called me when an agent was ready. The IRS agent I spoke with was actually able to put a temporary hold on collections while I get my documentation together, which stopped the immediate panic. They also confirmed that two of the tax years qualify for abatement under reasonable cause, which my accountant hadn't even mentioned. Still have a mess to clean up, but at least now I have a plan and actual information instead of my accountant's vague reassurances.

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QuantumQuasar

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22 I had a similar nightmare with late LLC filings. Don't trust your current accountant - they're clearly not on top of things. Here's what worked for me: 1) Fire your current accountant immediately 2) Get a tax resolution specialist (not just any accountant) 3) Request your own tax transcripts directly from the IRS 4) File Form 843 for penalty abatement for each year 5) If you've been making estimated tax payments despite late filing, make sure that's documented You might be able to get most penalties removed, but you'll need to be proactive. Don't wait for the IRS to keep sending notices.

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QuantumQuasar

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9 Is there a big difference between a regular accountant and a tax resolution specialist? I'm already paying so much in penalties that I'm worried about adding more professional fees.

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QuantumQuasar

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22 There's a huge difference. Regular accountants primarily prepare returns, while tax resolution specialists focus specifically on resolving IRS problems like penalties, liens, and collections. They typically have experience negotiating directly with the IRS and know exactly which relief programs apply to your situation. The fees might seem high upfront, but they often save you much more than they cost. In my case, I paid $1,500 for the specialist but they got over $8,000 in penalties removed. Just make sure to get someone who specializes in business tax issues, not just individual tax resolution.

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QuantumQuasar

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4 Has anyone dealt with the failure-to-file penalty for Form 1065 specifically? I'm in a similar situation but with a multi-member LLC, and we're getting hit with $2,100 per partner per month for late filing! It's absolutely crushing us.

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QuantumQuasar

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16 Yes! Form 1065 penalties are brutal - $220 per partner per month for up to 12 months (as of 2025 tax year). I was able to get them completely abated by demonstrating reasonable cause. Document any issues with previous tax preparers, health problems, or natural disasters that contributed to late filing. The key is being extremely specific about why each year was late.

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Michael Adams

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I've been through this exact nightmare with my LLC! Here's what I learned that might help: First, don't panic - you have options. The IRS penalty system is harsh but there are legitimate ways to get relief. Since you're a single-member LLC filing Schedule C, you're likely dealing with failure-to-file and failure-to-pay penalties on your personal return. Your current accountant sounds unreliable if they've consistently filed late despite claiming to file extensions. Extensions only give you time to file, not to pay - so if you owed taxes, you'd still get hit with penalties even with valid extensions. Here's my action plan that worked: 1) Get your IRS transcripts immediately to see what was actually filed and when 2) Fire your current accountant - they're clearly not handling your situation properly 3) Look into First Time Penalty Abatement for at least one tax year 4) Document everything about your previous accountant retiring and the chaos that caused 5) Consider "reasonable cause" arguments for the other years The key is being proactive. I waited too long hoping my accountant would fix things, and it just got worse. You might be surprised how much penalty relief is available if you approach it systematically. Don't let the intimidating notices paralyze you - there's definitely a path forward here.

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This is really helpful advice! I'm curious about the "reasonable cause" arguments you mentioned - what kind of documentation did you need to provide to the IRS? I have emails from my first accountant's office saying they were closing, but I'm not sure if that's enough proof. Also, how long did the whole penalty abatement process take once you submitted everything?

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