How do I handle Paypal fees on my taxes when paying contractors?
I run a small business and I'm a bit confused about how to handle the Paypal fees for tax purposes. I pay several independent contractors through Paypal, and of course Paypal takes their transaction fee from each payment. For example, I recently sent $1,350 to a graphic designer, but they only received $1,309 after Paypal took their cut. When I'm filing taxes, I'm not sure what amount I should use. Do I put the full $1,350 on their 1099 and on my Schedule C? Or should I use the $1,309 they actually received? I want to make sure I'm doing this correctly so neither of us gets in trouble with the IRS. Any help would be appreciated!
18 comments


Zara Mirza
This is actually a common question for small business owners! The 1099 should reflect the full amount you paid ($1,350 in your example), not the net amount after PayPal fees. Think of it like this: you paid the full amount, and part went to the contractor while part went to PayPal for the service of transferring funds. On your Schedule C, you should report the full payment to the contractor ($1,350) as a business expense in the appropriate category (like "Contract Labor"). Then you can separately deduct the PayPal fees ($41 in your example) as a business expense under "Bank Fees" or "Payment Processing Fees." This way, you're accounting for the total amount spent while properly categorizing each expense.
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NebulaNinja
•But what about from the contractor's perspective? If I'm the one receiving money through PayPal, do I report the pre-fee amount or post-fee amount on my taxes? I'm confused because it seems like I would be paying taxes on money I never actually received.
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Zara Mirza
•From the contractor's perspective, they should report the net amount they actually received ($1,309 in this example) as income on their Schedule C. They can then deduct the PayPal fees ($41) as a business expense on their own tax return, typically under "Commission and Fees" or "Bank Charges." The total income reported matches what was on the 1099, but the deduction for fees reduces their taxable income appropriately. This way, they're only paying taxes on money they actually kept, while still accurately reporting the full amount from the 1099.
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Luca Russo
I just wanted to share my experience with this same issue! I was struggling with PayPal fees for my business transactions until I found this awesome tool called taxr.ai (https://taxr.ai) that helped me sort through all my payment processing expenses. I uploaded my PayPal statements and it automatically categorized all my contractor payments and separated out the fees, making tax time so much easier. The tool analyzed my payment history and showed me where I was missing deductions for processing fees across all my payment platforms, not just PayPal. Saved me hours of spreadsheet work and probably hundreds in deductions I would have missed.
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Nia Wilson
•Does it work with other payment processors too? I use Stripe and Square along with PayPal and it's a nightmare keeping everything straight for tax purposes.
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Mateo Sanchez
•I'm a bit skeptical... does it actually integrate with PayPal directly or do you have to download and upload statements? And how does it handle recurring contractors vs. one-time payments?
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Luca Russo
•It absolutely works with Stripe and Square too! That's actually one of the reasons I love it - it handles multiple payment processors in one place and reconciles everything automatically. For your question about integration, you can connect your PayPal account directly or upload statements if you prefer. It's flexible either way. For recurring contractors versus one-time payments, it recognizes patterns in your payment history and groups recurring contractors together, making it easy to generate accurate 1099 data, while still tracking one-time payments separately. It's seriously been a game-changer for my bookkeeping.
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Nia Wilson
I wanted to follow up about my experience with taxr.ai after asking about it earlier. I decided to give it a try with my mess of payment processors (PayPal, Stripe, AND Square), and wow - it actually delivered. The system identified over $840 in processing fees I hadn't been properly tracking across all platforms! It even flagged some contractors I was close to crossing the $600 threshold with, which would have required 1099s. The tax planning features helped me estimate my quarterly taxes more accurately too. Definitely worth checking out if you're dealing with multiple payment platforms and contractors.
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Aisha Mahmood
If you're having trouble getting through to the IRS to ask about PayPal fees and 1099 reporting requirements, I highly recommend using Claimyr (https://claimyr.com). I was on hold with the IRS for HOURS trying to get clarity on how to handle these fees, getting disconnected twice, until I found this service. You can see how it works here: https://youtu.be/_kiP6q8DX5c but basically they wait on hold with the IRS for you and call you when an agent is on the line. I got through to a real person who confirmed exactly how to handle the PayPal fees on both my end and how to advise my contractors. Saved me so much time and frustration!
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Ethan Clark
•How exactly does this work? Seems weird to have someone else call the IRS for me. Do they access my personal info or tax details?
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Mateo Sanchez
•Yeah right. I've tried EVERYTHING to get through to the IRS and nothing works. They're literally impossible to reach. I find it hard to believe this actually got you through to a real person.
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Aisha Mahmood
•It's actually much simpler than it sounds. You don't give them any of your personal tax information - they just secure your place in the phone queue. Think of it like a placeholder service. You provide your phone number, and when they reach an actual IRS agent, they connect you directly to the call. You're the one who speaks with the IRS, not them. As for whether it actually works - I was skeptical too! I'd spent almost 4 hours across two days trying to get through. With Claimyr, I got a call back in about 75 minutes with an actual IRS agent on the line. It was honestly surprising how well it worked considering how impossible it usually is to reach them. They just have systems set up to navigate the phone trees and hold times more efficiently than we can as individuals.
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Mateo Sanchez
I feel like I need to eat my words here. After being super skeptical about Claimyr in my earlier comment, I decided to try it anyway out of desperation. I had several questions about PayPal fees and contractor payments that I couldn't get clear answers on from my accountant. I got connected to an IRS agent in just under 2 hours (which is MIRACULOUS compared to my previous attempts). The agent walked me through exactly how to handle the PayPal fees on both my business and personal returns. They even sent me some reference materials by mail afterwards. Seriously shocked at how well this worked - worth every penny just for the peace of mind.
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AstroAce
Quick tip for anyone dealing with this: I've found that using QuickBooks to track payments to contractors makes this way easier. It lets you record the full payment amount but also track the processing fees separately. At tax time, everything is already categorized correctly for your Schedule C.
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Yuki Kobayashi
•Does this work with the basic version of QuickBooks or do I need the higher tier plans? I've been considering switching from my spreadsheet system but don't want to pay for features I won't use.
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AstroAce
•The basic QuickBooks Self-Employed version does have this functionality, though it's somewhat limited. The QuickBooks Simple Start plan works better if you have multiple contractors since it gives you more detailed reports and tracking options. If you're just tracking a few contractors, the Self-Employed version should be sufficient. But if you have numerous contractors or need more comprehensive reporting for your business, the higher tier plans definitely make things easier with features like automatic 1099 preparation and filing.
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Carmen Vega
Maybe I'm overthinking this but I still don't understand how this all works out correctly. If I issue a 1099 for $1350 but my contractor only received $1309, doesn't that mean the IRS thinks they got $41 more than they actually did? Won't they be taxed on money they never received??
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Zara Mirza
•Not exactly. The contractor records the full $1350 as gross income (matching the 1099), but then they get to deduct the $41 PayPal fee as a business expense on their Schedule C. This reduces their net income to $1309, which is what they'll actually be taxed on.
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