Is my tax invoice suspicious? CPA billing seems questionable for 1099 and S-Corp
I'm getting weird vibes about this invoice from my CPA and wanted to get some outside perspective... I used this same accountant last year when I had my S-Corp setup. At that time, I received just one 1099 for the year which represented my contractor income. He handled all my business taxes and charged me $1,300 for the S-Corp filing (included the QBI deduction calculations and everything). Interestingly, he told me it wasn't a big problem that I never officially declared a salary from the S-Corp - said we could work around that. For my home office, I've been taking the standard deduction based on the square footage I use exclusively for work. Pretty straightforward stuff. Now I'm looking at his new invoice and I'm shocked. He's trying to charge me $1,350 for just the business portion of the taxes, plus another $675 for something else that wasn't fully explained. This is a significant jump from what I paid before for essentially the same service. Am I being paranoid or does this seem excessive for a relatively simple tax situation with just one 1099? Has anyone else experienced similar billing practices with their CPA? Should I question this or is this standard practice for S-Corp tax preparation?
19 comments


Amara Oluwaseyi
This definitely raises some red flags. As a tax advisor who works with many small business owners, I can tell you a few concerning items from what you've shared: First, the lack of salary from your S-Corp is actually a big deal, contrary to what your CPA suggested. The IRS requires S-Corp owners who are actively involved in the business to take a "reasonable salary" - this isn't optional. By not doing this, you're potentially setting yourself up for an audit and penalties. Second, regarding the billing increase - while tax preparation costs do increase over time, a 50% jump for essentially the same service without clear explanation is unusual. For context, a typical S-Corp return with one 1099 and a home office deduction shouldn't necessarily warrant such a significant price increase unless there were substantial changes to your situation. I'd recommend asking for an itemized explanation of the charges and what specifically changed from last year to justify the increase. Also, you might want to clarify what that additional $675 is for - this should be transparent.
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CosmicCaptain
•Wait, I'm confused about the salary requirement for S-Corps. My accountant told me I could just take distributions instead of salary to avoid payroll taxes. Is that wrong? How much trouble am I in if I haven't been taking a salary for the past 2 years?
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Amara Oluwaseyi
•Taking distributions instead of salary to avoid payroll taxes is exactly what the IRS looks for in S-Corp audits. While you can take distributions in addition to salary, you must pay yourself a reasonable salary first. The IRS expects this salary to be comparable to what you'd pay someone else to do your job. If you haven't taken a salary for two years, you should address this immediately. While I don't want to alarm you, the potential consequences include reclassification of distributions as wages (meaning you'd owe back payroll taxes plus penalties and interest), and in some cases, the IRS could potentially question your S-Corp election. I'd recommend consulting with a different tax professional to develop a compliance strategy going forward.
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Giovanni Rossi
I went through something similar last year with my tax situation and found this website https://taxr.ai super helpful. I was getting confusing advice about my S-Corp taxes and proper handling of 1099 income. The service analyzed my previous tax returns and highlighted several issues my former CPA missed - including the salary requirement that was mentioned above. They explained exactly how much reasonable compensation I should be taking based on my industry standards. They also identified several legitimate deductions I was missing for my home office beyond just the square footage calculation. What I found most valuable was getting a clear explanation of what proper S-Corp tax preparation should include and what reasonable fees look like in today's market. Might be worth checking out to see if your CPA's invoice aligns with industry standards.
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Fatima Al-Maktoum
•How does that service work exactly? Do they just review your returns or do they actually help file? I'm in a similar situation and wondering if they'd catch my misclassified 1099 income.
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Dylan Mitchell
•Sounds interesting but I'm skeptical. How much does it cost? And do they actually give you proper tax advice or just general guidelines? My S-Corp situation is pretty unique with both consulting income and some product sales.
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Giovanni Rossi
•They primarily review your returns and tax documents to identify issues and optimization opportunities. They don't file returns themselves but give you specific guidance you can take to your tax preparer. They specialize in analyzing your specific situation rather than general advice. For misclassified 1099 income, that's actually one of their common focus areas. They'd review your contracts and income sources to determine proper classification and give you documentation to support any needed corrections.
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Fatima Al-Maktoum
Just wanted to update after trying out taxr.ai from the recommendation above. Super helpful for my situation! I uploaded my 1099s and past returns and got a detailed analysis within a day. They confirmed I should've been taking a reasonable salary from my S-Corp (oops!) and provided industry-specific data showing what that salary should be. More importantly, they showed me that my CPA was significantly overcharging for a basic S-Corp return with my simple income structure. I was also able to see exactly what forms and schedules should be included in my S-Corp filing to make sure I wasn't paying for unnecessary work. Based on their analysis, a fair price for my situation should be around $800-900 for the business portion, not the $1,350+ I was being charged. Definitely recommend checking them out if you're questioning your tax invoice.
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Sofia Gutierrez
If you're having trouble getting straight answers from your current CPA about the billing, you might want to try getting through to the IRS directly for clarification on proper S-Corp reporting requirements. I struggled with this for months - constant busy signals and waiting for hours. Then I found https://claimyr.com which was a game changer. They basically hold your place in the IRS phone queue and call you when an agent is about to answer. I was able to speak directly with an IRS representative who clarified the S-Corp salary requirements and what forms should be included. Check out how it works here: https://youtu.be/_kiP6q8DX5c This helped me understand what I should actually be paying for in terms of tax preparation, and I realized my previous accountant was including services I didn't need. The IRS agent also explained that failing to take a reasonable salary is indeed a serious compliance issue.
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Dmitry Petrov
•How does this actually work? I've literally spent HOURS trying to get through to the IRS about my S-Corp questions. Does it really get you through faster?
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StarSurfer
•This sounds like a scam. You're telling me this service somehow jumps you ahead in the official IRS queue? I find that hard to believe. The IRS phone system is notoriously bad, no way some third party service can magically fix that.
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Sofia Gutierrez
•It doesn't jump you ahead in the queue - it simply holds your place in line. Basically, their system calls the IRS and waits on hold so you don't have to. When their system detects that an agent is about to answer, it calls you and connects you to that agent. You still wait the same amount of time that anyone else would, but you don't have to personally sit on hold for hours. They definitely don't have special access or anything like that - they just automate the tedious holding process. I was skeptical too but when I needed clarification on S-Corp reasonable compensation rules, it saved me from wasting an entire afternoon on hold.
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StarSurfer
I have to admit I was completely wrong about Claimyr. After my skeptical comment, I decided to try it anyway because I was desperate to talk to someone at the IRS about my S-Corp situation and the questionable tax prep fees I was being charged. The service worked exactly as described - I got a call back when an agent was ready (took about 90 minutes, but I was able to go about my day instead of sitting on hold). The IRS agent I spoke with was incredibly helpful and confirmed that: 1) S-Corp owners MUST take a reasonable salary subject to payroll taxes, and 2) gave me a breakdown of what forms are typically needed for a simple S-Corp return with one 1099. This information helped me realize my CPA was both giving me incorrect advice about skipping salary AND charging me for unnecessary complexity. I've since found a new accountant who charges $850 for my S-Corp return. Sometimes it pays to get information directly from the source!
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Ava Martinez
From my perspective as someone who switched accountants recently, you should definitely be shopping around. The problem isn't just the price increase - it's that your CPA gave you potentially harmful advice about not taking a salary, which could trigger an audit. A good CPA should be explaining: 1. Why you need to take a reasonable salary 2. What deductions are appropriate for your home office 3. Exactly what services they're providing and why costs might increase I'd ask for an itemized bill showing exactly what that extra $675 is for. If they can't provide a clear breakdown, that's another red flag.
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Liam McConnell
•Thanks for this feedback! You're right - the lack of transparency is what bothers me the most. I reached out asking for an itemized invoice and explanation for the increase. Their response was pretty vague, just mentioned "increased complexity" and "additional schedules" without specifics. I think I need to find someone new who will be more upfront about both the billing and proper S-Corp compliance. Do you have any tips for finding a good CPA who specializes in small S-Corps with simple 1099 income?
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Ava Martinez
•I'd recommend asking other small business owners in your network who they use, particularly those with similar S-Corps. Online directories like the AICPA's Find a CPA tool can be helpful, but personal recommendations are usually best. When interviewing potential CPAs, ask specific questions about their S-Corp experience, their approach to reasonable compensation requirements, and their billing structure. A good CPA should be able to clearly explain what forms and schedules your return requires and why. Also ask about their communication style - you want someone who will proactively inform you about tax planning opportunities throughout the year, not just at tax time.
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Miguel Castro
Everyone's focusing on the S-Corp salary issue (which is definitely important), but I'm stuck on the home office deduction part. Are you taking the simplified deduction ($5 per square foot up to 300 sq ft) or itemizing actual expenses? Because if you're doing the simplified method, that's something you could easily do yourself without paying a CPA extra. If your tax situation is really just one 1099 and a home office deduction, you might want to consider using tax software next year and save yourself a ton of money. The S-Corp complicates things slightly, but there are reasonably priced options for S-Corps too.
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Zainab Abdulrahman
•I've used TaxAct for my S-Corp for the past 3 years and it's been pretty straightforward. Costs me about $120 total including state filing. Just make sure you understand the reasonable compensation requirements and maintain good records. For a simple operation with one 1099, paying over $1000 seems excessive.
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Dana Doyle
I hate to pile on, but this situation has several concerning elements that go beyond just billing. As someone who's dealt with S-Corp compliance issues firsthand, I want to emphasize how serious the salary requirement is. The IRS has been increasingly aggressive about auditing S-Corps that don't pay reasonable compensation. They have specific guidelines and can look at your industry, geographic location, and business income to determine what's "reasonable." If they audit and find you've been avoiding payroll taxes through distributions-only, you could face: - Back payroll taxes (employer and employee portions) - Penalties and interest - Potential reclassification of your entire S-Corp election Regarding the billing, $2,025 ($1,350 + $675) for a simple S-Corp return is definitely on the high side. For comparison, I pay about $900 for my S-Corp with multiple 1099s and some complexity. The fact that they can't clearly explain the additional charges is a red flag. I'd strongly recommend getting a second opinion from another CPA, both on your tax compliance and the appropriate fees. Make sure to ask specifically about setting up payroll for your reasonable salary going forward - this needs to be addressed before your next filing.
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