Forgot to file one 1099-NEC and 1096 with the IRS. What penalty should I expect?
Just realized I completely spaced on filing a 1099-NEC and 1096 for a contractor I paid through my LLC back in February 2022. I paid another small business about $6100 for helping me with a project that was just a one-time thing. Now it's tax season 2025 and I'm going through all my paperwork and had that "oh crap" moment when I realized I never submitted those forms to the IRS. I'm planning to file the forms tonight, but I'm stressing about what kind of penalty I might be looking at here. Has anyone dealt with this before? How much is this mistake going to cost me? Any advice would be super appreciated!
25 comments


Mateo Rodriguez
The good news is you're catching this and fixing it - that counts for something! The IRS does have penalties for late 1099-NEC filings, but they vary based on how late you file and whether there was intentional disregard. Since you're filing more than a year late, you're looking at a penalty of $290 per form (2022 rate, may have been adjusted since). So that would be $290 for the missed 1099-NEC. The 1096 is just a transmittal form and doesn't carry its own separate penalty. The IRS sometimes offers penalty relief for first-time mistakes, especially for small businesses. When you file, include a letter explaining this was an oversight and that you've implemented procedures to prevent it from happening again. This might help reduce or eliminate the penalty. Also, check if your buddy/contractor reported the income correctly on their taxes. If they did, the IRS might be more lenient since they got their tax revenue anyway.
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Aisha Hussain
•Would it make a difference if I e-file vs mail in the late forms? And I'm curious - does the amount paid to the contractor affect the penalty amount or is it a flat rate regardless of payment size?
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Mateo Rodriguez
•For late filings, the method (e-file vs. paper) doesn't affect the penalty amount, though e-filing is generally processed faster. The penalty is a flat rate per form regardless of the payment amount - whether you paid the contractor $600 or $60,000, the penalty for a late 1099-NEC remains the same flat rate. The IRS is really more concerned about the information being reported than the specific dollar amount in these cases, though larger payments might attract more scrutiny overall.
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GalacticGladiator
Been there, done that! After dealing with a similar issue, I found taxr.ai (https://taxr.ai) extremely helpful. I had forgotten to file a 1099 for a contractor and was freaking out about penalties. Their system analyzed my situation, showed me the specific IRS penalty guidelines that applied to my case, and suggested exactly what to include in my reasonable cause letter to the IRS. They have this feature where they can review your specific situation and give you personalized guidance based on actual IRS precedents. The best part was their document analysis that pointed out I qualified for first-time penalty abatement since I had a good compliance history. Saved me from a panic attack and potentially hundreds in penalties!
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Ethan Brown
•How long did the whole process take? I'm in a similar situation but need to resolve it ASAP since I'm refinancing my house next month.
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Yuki Yamamoto
•Does it actually work for complex situations? I have multiple LLCs and partnerships and the tax paperwork gets overwhelming sometimes. I've missed a couple filings and got hit with penalties before.
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GalacticGladiator
•The process only took about 20 minutes to get the analysis and guidance. They have this AI tool that processes everything quickly, so you don't have to wait days like with a traditional accountant. Should give you plenty of time before your refinancing. For complex business structures, it actually works really well. The system is designed to handle multi-entity situations and can analyze the relationships between your businesses. It specifically looks at your filing history across entities to identify the best approach for penalty abatement based on your overall compliance record.
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Yuki Yamamoto
Just wanted to follow up about my experience with taxr.ai - I decided to give it a try after my skeptical question. Honestly amazed at how well it worked for my situation! I uploaded docs for my 3 different businesses and it immediately identified which ones qualified for first-time penalty abatement. The system generated a perfect reasonable cause letter that included specific references to my filing history. Just got confirmation from the IRS yesterday that they're waiving $870 in penalties across two of my businesses. The third one still has a penalty but it's much lower than I expected. If you're dealing with missed 1099-NECs like the original poster, definitely worth checking out.
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Carmen Ruiz
If you need to actually speak with someone at the IRS about this (which I recommend), good luck getting through on your own! I spent HOURS on hold trying to explain a similar situation with late 1099s. Finally used https://claimyr.com to get a callback from the IRS instead of waiting on hold. They have this system where they navigate the IRS phone tree for you and when an agent is available, they call you. You can see how it works here: https://youtu.be/_kiP6q8DX5c When I finally got through, the IRS agent was actually pretty helpful and walked me through the abatement request process. They explained exactly what documentation I needed to provide and even gave me the correct address to send everything. Saved me so much time and frustration!
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Andre Lefebvre
•How does this even work? Seems kinda sketchy that a third party can somehow get the IRS to call you faster than you can get through yourself.
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Zoe Dimitriou
•Idk sounds too good to be true. I've been trying to reach the IRS for 2 weeks about a similar issue and just get disconnected after waiting for hours. You're telling me this service actually gets them to call you back? What's the catch?
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Carmen Ruiz
•It's not sketchy at all - they use technology to automate the waiting process. Basically, their system calls the IRS and navigates through all the prompts for you, then stays on hold so you don't have to. When a human agent finally picks up, that's when they connect you. It's like having someone else wait in line for you. There's no catch regarding the service itself - it does exactly what it claims to do. The IRS doesn't know or care who waited on hold, they just know someone's on the line with a question when they pick up. I was skeptical too, but after wasting an entire afternoon on hold and getting disconnected twice, I was desperate enough to try it. Ended up speaking with an IRS agent within about 2 hours of using the service, and I was doing other things during that time instead of listening to hold music.
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Zoe Dimitriou
Ok I need to publicly eat my words here. After posting my skeptical comment, I was desperate enough to try Claimyr for my 1099-NEC issue. Holy crap it actually worked! Set it up yesterday afternoon, got a call back from an actual IRS agent this morning. The agent pulled up my account and confirmed that since this was my first time missing a filing deadline, I qualified for the first-time penalty abatement program. She processed my request right on the phone and said I should get confirmation in 2-3 weeks. Would have NEVER known about this without actually talking to a human at the IRS. Can't believe I wasted so many hours trying to get through on my own!
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QuantumQuest
One thing nobody's mentioned yet - if your contractor correctly reported the income on their Schedule C, you have a strong case for penalty abatement. The IRS is mainly concerned with collecting the taxes, and if your buddy paid taxes on the income, you can argue there was no harm to the treasury. Ask your contractor for a statement confirming they reported the income. Include this with your reasonable cause letter when you file the late 1099-NEC. I did this exact thing last year and got my penalty fully waived.
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Nia Thompson
•That's incredibly helpful! I just texted him and he confirmed he did report all the income on his Schedule C. Should I just have him write a quick letter stating this or is there some official form we need to use?
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QuantumQuest
•A simple signed statement from him is usually sufficient. No official form needed. Have him include his business name, EIN if applicable, the tax year, and a clear statement that he reported the full $6100 on his Schedule C. Make sure he signs and dates it. Include this with your reasonable cause letter when you submit your late 1099-NEC. This provides the IRS with proof that the tax system worked correctly even though you missed the filing deadline, which strengthens your case for penalty abatement significantly.
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Jamal Anderson
Something similar happened to me last year. Filed late 1099s for three contractors. Got hit with penalties initially but called and asked about the "First Time Abatement" program and got all penalties waived! Make sure to mention you have a clean compliance history if that's true for you.
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Mei Zhang
•I tried the first time abatement route but got denied because I had a late filing 3 years ago. Do they look at your entire history or just recent years?
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Liam McGuire
Don't forget that if you already paid him as a contractor, he should have paid his own self-employment taxes on that income. You're just fixing the reporting part. Might help you sleep better at night knowing the actual tax was probably paid even if the paperwork was late!
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Mason Kaczka
This is exactly the kind of situation where staying calm and being proactive really pays off! I went through something similar with my small business two years ago - missed filing a 1099-NEC for a $4,200 payment to a freelance designer. Here's what worked for me: I filed the late forms immediately with a detailed reasonable cause letter explaining it was an honest oversight, not intentional disregard. I also included evidence that my contractor had properly reported and paid taxes on the income. The IRS ended up waiving the entire penalty under their first-time abatement program. The key is to file those forms ASAP and be completely transparent about the mistake. Document everything - when you discovered the error, steps you're taking to prevent it in the future, and any evidence that the contractor reported the income correctly. One tip: when you write your reasonable cause letter, focus on your overall good compliance history (if applicable) and emphasize that this was a procedural oversight, not tax avoidance. The IRS is surprisingly reasonable when they see genuine efforts to comply. You've got this! The fact that you caught it and are fixing it immediately shows good faith.
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Sofia Hernandez
•This is such reassuring advice, thank you! I'm definitely going to follow your approach with the detailed reasonable cause letter. Quick question - when you mention documenting "steps you're taking to prevent it in the future," what kind of specific measures did you include? I want to make sure I'm thorough but not overdoing it. Did you set up any particular systems or software to track contractor payments going forward?
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William Rivera
I'm dealing with almost the exact same situation right now! Missed filing a 1099-NEC for a contractor I paid $5,800 last year. Reading through all these responses has been incredibly helpful - especially learning about the first-time abatement program. Based on what everyone's shared, here's my plan of attack: 1) File the late forms tonight with e-filing, 2) Write a detailed reasonable cause letter emphasizing this was an oversight and my otherwise clean compliance record, 3) Get a signed statement from my contractor confirming they reported the income on their Schedule C, and 4) If needed, use one of those callback services to actually speak with an IRS agent. The $290 penalty hurts but it's not the end of the world, and it sounds like there's a good chance of getting it waived if I handle this properly. Thank you everyone for sharing your experiences - this community is amazing for situations like this where you're stressed and need real advice from people who've been there!
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Ava Martinez
•That sounds like a solid plan! I went through something similar about 6 months ago and your approach is exactly what I wish I had done from the start. One small addition - when you're writing that reasonable cause letter, try to be specific about the date you discovered the oversight and what triggered you to realize the mistake. The IRS seems to appreciate that level of detail because it shows you weren't just ignoring the requirement. Also, don't stress too much about the process. I was panicking when I first realized my mistake, but the IRS agents I spoke with were actually pretty understanding once they saw I was making a good faith effort to fix everything. The fact that you caught this during tax season and are addressing it immediately will definitely work in your favor. Good luck with everything!
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Carmen Vega
I went through this exact scenario about 18 months ago - forgot to file a 1099-NEC for a $7,200 contractor payment. I was absolutely panicking when I realized it during the following tax season, but it turned out way better than I expected! Here's what happened in my case: I immediately e-filed the late 1099-NEC with a reasonable cause letter explaining it was an honest oversight. I emphasized my clean compliance history and included a signed statement from my contractor confirming he had reported and paid taxes on the full amount. The initial penalty notice was $290, but I called the IRS and requested first-time penalty abatement. The IRS agent was surprisingly helpful and understanding. She reviewed my account, confirmed I had no prior penalties, and approved the abatement request on the spot. Got the confirmation letter about 3 weeks later showing the penalty was completely waived. Key takeaways: File immediately, be completely honest about the mistake, document your good compliance history, and don't be afraid to call and ask about penalty relief programs. The IRS is actually pretty reasonable when they see you're making a genuine effort to correct an honest mistake. You're going to be fine - the fact that you caught this and are fixing it right away shows good faith, which goes a long way with them!
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Abigail Patel
•This is exactly what I needed to hear! Your experience gives me so much hope. I'm in almost the identical situation - missed a 1099-NEC for a contractor payment and discovered it during this tax season. The panic is real, but reading about your successful penalty abatement makes me feel like there's light at the end of the tunnel. I'm curious about the phone call process - did you call the main IRS number or is there a specific line for penalty abatement requests? And roughly how long did it take to get through to someone? I've heard horror stories about waiting on hold for hours, but some people in this thread mentioned using callback services to avoid that nightmare. Also, when you mentioned emphasizing your "clean compliance history," did you need to provide specific documentation of that, or did the agent just look it up in their system? I want to make sure I have everything ready before I make that call. Thanks for sharing your experience - it's incredibly reassuring to know this worked out well for someone in such a similar situation!
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