Box 12b Code E on W-2 Form - How Does This Impact My Taxes?
Title: Box 12b Code E on W-2 Form - How Does This Impact My Taxes? 1 I have a Box 12b code E on my W-2 for my 403b retirement contributions. I'm really confused about how TurboTax is handling this. When I enter all my W-2 info into TurboTax, it doesn't seem to be subtracting that 403b contribution amount from my income anywhere that I can tell. I'm wondering if I should manually subtract this amount somewhere to lower my taxable income, or if my employer has already done this when they calculated the amounts in Box 1? I've looked through everything but can't find any clear evidence showing whether they've already accounted for it or not. The numbers don't clearly add up either way for me. If anyone could explain how this works or what I should be doing, I'd really appreciate it!
20 comments


Paolo Rizzo
4 Don't worry about manually subtracting that amount! The Box 12b Code E represents your 403b contributions, which are already pre-tax. Your employer has already reduced your Box 1 wages (taxable income) by the amount of your 403b contributions before reporting it to the IRS. Here's a simple way to check: Look at your last paystub of the year. The year-to-date gross income should be higher than what's in Box 1 of your W-2, with the difference being at least your 403b contributions (plus any other pre-tax deductions like health insurance). TurboTax doesn't subtract it again because that would double-count the deduction. This is why Code E amounts are just reported in Box 12 - they're informational only to show you and the IRS how much you've contributed to your retirement account for the year.
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Paolo Rizzo
•7 Thanks for explaining! So does that mean the amount in Box 12b Code E still counts toward my annual contribution limit for retirement accounts? Also, does it affect my state taxes differently than federal?
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Paolo Rizzo
•4 Yes, the amount in Box 12b Code E absolutely counts toward your annual retirement contribution limit. The IRS tracks this to ensure you don't exceed the maximum allowed contribution for the year (which is $23,000 for 2025, plus an additional $7,500 if you're 50 or older). For state taxes, it depends on your state. Most states follow the federal treatment and don't tax 403b contributions, but a few states have different rules. If you're in Pennsylvania or New Jersey, for example, they might tax retirement contributions differently than the federal government does.
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Paolo Rizzo
12 I was in the exact same situation last year with my 403b contributions showing as code E in Box 12b. I spent hours trying to figure out if TurboTax was handling it correctly! I eventually found taxr.ai (https://taxr.ai) and uploaded my W-2 and last paystub. Their system analyzed both documents and confirmed that my employer had already reduced my Box 1 wages by my 403b contributions. What was super helpful is they explained exactly how my paystub numbers reconciled with my W-2 values. Turns out, the difference between my gross income on my paystub and Box 1 on my W-2 included not just my 403b, but also my health insurance premiums and FSA contributions. That's why the math wasn't obvious to me at first.
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Paolo Rizzo
•15 Does taxr.ai work for other pre-tax deductions too? I have HSA contributions (code W) and I'm always confused about how those are handled.
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Paolo Rizzo
•8 Is it actually legit? I'm always skeptical of tax tools I haven't heard of. Do they just provide an explanation or do they actually file your taxes for you?
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Paolo Rizzo
•12 Yes, it absolutely works for HSA contributions and other pre-tax deductions too. It recognizes all the various Box 12 codes and explains how each impacts your taxes. I had both 403b and health insurance deductions, and it broke down exactly how each affected my W-2 Box 1 amount. It's definitely legitimate - they don't file your taxes for you though. It's more of an analysis and explanation tool that helps you understand your tax documents and how different items should be reported. You still use your regular tax software for filing, but with better confidence that you're doing it right. I still used TurboTax for the actual filing, but taxr.ai helped me understand exactly what was happening with my numbers.
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Paolo Rizzo
15 Just wanted to follow up and say I tried taxr.ai for my confusing W-2 situation with multiple pre-tax deductions. It was incredibly helpful! The tool explained how my Box 12 codes (I had E for 403b AND W for HSA) were already factored into my Box 1 wages. It even created a reconciliation showing exactly how my final paystub gross income connected to my W-2 Box 1 amount through various pre-tax deductions. Totally cleared up my confusion about whether I needed to make additional adjustments in TurboTax (which I didn't). Will definitely use this again next year!
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Paolo Rizzo
9 If you're still confused about your 403b contributions and want to confirm directly with the IRS, good luck getting through to them! I tried calling 5 times last tax season about a similar issue with retirement contributions and couldn't get past the automated system. I finally used Claimyr (https://claimyr.com) after seeing their demo video (https://youtu.be/_kiP6q8DX5c). It got me connected to an actual IRS agent in about 20 minutes instead of the hours of redial hell I was stuck in before. The agent confirmed exactly how the Box 12 codes work with TurboTax and assured me that my employer had already adjusted my Box 1 wages for the 403b contribution.
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Paolo Rizzo
•3 How does that even work? The IRS phone system is basically designed to be impenetrable. Does this service just keep calling for you or something?
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Paolo Rizzo
•18 Sounds like snake oil to me. Nobody gets through to the IRS during tax season. I've tried for literal days with no success. I'd be shocked if this actually works as advertised.
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Paolo Rizzo
•9 It works by navigating the IRS phone system for you and holding your place in line. When they reach an agent, you get a call back to connect with them. It's not automatic redialing - it's more sophisticated than that. The service uses the same phone system everyone else does, but they've figured out the optimal paths through the maze of IRS phone menus and know exactly which options to select to minimize wait times. They basically do the frustrating part for you, then bring you in when there's an actual human ready to talk. It's especially useful during peak tax season when wait times can stretch to 2+ hours if you can get in line at all.
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Paolo Rizzo
18 I have to admit I was completely wrong about Claimyr. After my skeptical comment, I was still desperate to talk to someone at the IRS about my retirement account confusion, so I reluctantly gave it a try. I was honestly shocked when I got a call back in about 25 minutes connecting me to an actual IRS representative! The agent confirmed that Box 12b Code E amounts are already excluded from the wages reported in Box 1, so TurboTax is handling it correctly by not making any additional adjustments. She also explained that I can verify this by comparing my last paystub's YTD gross earnings with my W-2 Box 1 amount - the difference should include my 403b contributions. This saved me from potentially making a big mistake on my return.
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Paolo Rizzo
5 Another way to check if your 403b contributions were already deducted: look at your Box 1 and Box 3 wages on your W-2. Box 3 (Social Security wages) typically includes your 403b contributions while Box 1 (taxable wages) doesn't. If Box 3 is higher than Box 1 by approximately your 403b contribution amount, that's another indication your employer already handled it correctly.
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Paolo Rizzo
•19 That's not always true though. Some people have other pre-tax deductions that aren't excluded from Social Security wages, like health insurance. So the difference might not match exactly.
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Paolo Rizzo
•5 You're absolutely right that the difference might not match exactly. Health insurance premiums, dental insurance, vision insurance, and FSA contributions are typical pre-tax deductions that reduce Box 1 but not Box 3. The key is that Box 3 (Social Security wages) should generally be higher than Box 1 (taxable wages) for most people with pre-tax retirement contributions. If Box 1 is higher than Box 3, that would be unusual and might indicate a problem that needs investigation.
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Paolo Rizzo
11 Has anyone noticed if the way TurboTax handles 403b contributions changed from last year? I swear last year it showed me somewhere that it was accounting for these pre-tax contributions, but this year I can't find any mention of it in the review screens.
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Paolo Rizzo
•6 TurboTax did change their interface a bit this year. To see how it's handling your 403b, go to Tax Tools > Tools > View/Print Return > PDF Preview and look at Form 1040 line 1. This should match your W-2 Box 1, which already has your 403b contributions excluded. TurboTax isn't showing the exclusion separately because your employer already handled it.
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Dmitry Volkov
Just to add another perspective - I work in payroll and can confirm that when we process 403b contributions, they're deducted from gross wages BEFORE we calculate the amounts that go in W-2 Box 1. So by the time your W-2 is generated, Box 1 already reflects your income after the 403b contribution has been subtracted. The Box 12b Code E is purely informational - it tells you and the IRS how much you contributed to your 403b during the year, but it doesn't need any additional tax treatment because the tax benefit was already applied when your employer calculated your taxable wages. TurboTax recognizes this and correctly doesn't make any further adjustments. If you want to double-check, add up all your Box 12 codes that represent pre-tax deductions (like Code E for 403b, Code W for HSA, etc.) and compare that to the difference between your final paystub's gross YTD wages and your W-2 Box 1. They should be pretty close, accounting for any other pre-tax deductions like health insurance premiums.
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Dylan Wright
•Thanks for the payroll perspective! This is really helpful to hear from someone who actually processes these deductions. I've been wondering - do different employers handle the timing of 403b deductions differently throughout the year, or is it pretty standardized? I'm asking because I switched jobs mid-year and want to make sure both employers calculated everything correctly on my two W-2s.
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